0.2.28

MCView 0.2.28

• Added an option to show only fitted genes in the projected fold tab.
• Moved "Order by" and "Force cell type" to left sidebar in the 'Markers' tab.
• Added "Order cell types by" option to the 'Markers' tab.
• Fix: legend did not appear in the 'Markers' tab when using ggplot 3.5.0.

0.2.7

MCView 0.2.27

• Added an option to order by metadata when 'force cell type' is FALSE.
• Added lateral/noisy labels to gene selectors.

MCView 0.2.26

• Multiple fixes:

• Fix: loading of light_version bundles was broken.
• Fix: projection_point_size and scatters_point_size were not detected when added in other_params.
• Fix: import warned when there were metacells withour an edge when providing default_graph parameter.

• About tab is now the first in light-version bundles.

MCView 0.2.25

• Added an option to exclude lateral and noisy genes from marker heatmap.

0.2.24

• Added 'Load genes' and 'Save genes' buttons to the 'Markers' tab.
• Added 'Top correlated' widgets to metadata and gene modules.
• Added some missing package imports.

0.2.23

MCView 0.2.23

• Fix: plot limits were sometimes too low in differential expression plots.

MCView 0.2.22

• Added an option to sort gene heatmaps by metadata within each cell type.
• In 'Projection QC' tab, changed percentage of 'similar' to percentage of 'dissimilar' metacells.

0.2.20

fix: import crashed when atlas cell types where all numeric

Version 0.2.20

• Fixed metadata colors at 2D projections (previously the breaks were simply ignored)

Version 0.2.19

• Added an option to use disk for shiny caching (see shiny_cache_dir and shiny_cache_max_size parameters in create_bundle)
• Fix: sidebar still showed spaces for excluded tabs.

Version 0.2.13

• Added UMAP computation given anchor genes to the 'Manifold' tab.

Version 0.2.11

Fix: fitted gene plot was not shown when 'corrected_factor' was missing from the input data.

Version 0.2.10

• Changed zero-fold per gene plot to show expression vs zero-fold.
• Added two static plots to About tab.
• Added "top-correlated" panel to "Cell types" tab.
• Added "inner-std" plot to QC panel.
• Added "Stdev-fold" tab.
• Added "Projection QC" tab
• Fix: differential expression between metacells did not work with most recent version of qs.
• Added Lasso selection in Annotation and Differential Expression tabs.
• Added "# of metacells with significant inner-fold" to the "QC" tab.
• Filter lateral/noisy genes from diff expression plots.
• Annotate genes with their lateral/noisy status + gene modules.