Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Sequence Indexing and Search

BWT construction and search

Succinct Data Structure Library 3.0

A string library

Incremental construction of FM-index for DNA sequences

The Modular Aligner and The Modular SV Caller

A fast, AVX2 and ARM Neon accelerated FM index library

Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)

Burrows-Wheeler Transform and FM-index in golang

Wavelet tree based on a fixed block boosting technique

Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,

fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing

FM-Index for Rust

Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"

Dynatrace FM-Index library

Highly optimized genomic resources for GPUs

Computational Biology Assignments