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Jul 4, 2024 - Jupyter Notebook
microbiology
Here are 201 public repositories matching this topic...
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
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Jul 3, 2024 - Python
Code for the website of the ERC CoEvolve project
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Jul 2, 2024 - HTML
Build a partitioned pangenome graph from microbial genomes
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Jul 5, 2024 - Python
An interactive microbe behavior simulation.
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Jun 29, 2024 - JavaScript
multi-locus sequence type clade classifier for Clostridioides difficile
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Jun 28, 2024 - Python
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
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Jun 28, 2024 - Python
Antimicrobial Resistance Test Interpretation Engine
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Jun 28, 2024 - C#
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
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Jun 23, 2024 - R
The Pseudobatch transformation is a method to easy analysis of measurement from a fed-batch fermentation process. After transformation, the data can be analysed as if it was obtained from a batch fermentation process. The Pseudobatch transformation is especially useful for fed-batch processes where samples where drawn from the bioreactor.
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Jun 20, 2024 - Jupyter Notebook
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
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Jun 17, 2024 - Python
SPIRO is a Smart Plate Imaging Robot
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Jun 12, 2024 - Python
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
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Jun 11, 2024 - Python
scripts and notes for learning
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Jun 4, 2024 - Jupyter Notebook
QR pipeline to generate QR codes to label petri dishes and automatically rename the pictures taken afterwards
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Jun 4, 2024 - Shell
A genome visualization python package for comparative genomics
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May 26, 2024 - Python
Microbial Community Analysis with Chipster
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May 24, 2024
Geochemistry pipeline for processing and visualising data from IRMS, IC and ICP-MS
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May 21, 2024 - R
Rapidly extract a flexible bacterial core genome alignment
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May 14, 2024 - C++
A tool for phylogenetic comparison and analysis of microbe including gene's environmental association
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May 22, 2024 - HTML
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