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@giovannellilab

Giovannelli Lab

Giovannelli Lab at the University of Naples Federico II

Welcome to the GitHub page of the Giovannelli Lab! 👋👋


My group aims to explore and understand the emergence and evolution of life and the co-evolution of the Geosphere and the Biosphere.

Our current work lays at the interface between microbial ecology, microbial evolution and geochemistry. We integrate classic microbiology techniques with cutting-the-edge molecular and computational tools in order to investigate the role of microbes in shaping the environment, their interactions with abiotic factors and the drivers of evolution and adaptation.

More details on the following link: https://www.donatogiovannelli.com/

Popular repositories Loading

  1. Geomosaic Geomosaic Public

    A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis

    Python 3 1

  2. giovannellilab.github.io giovannellilab.github.io Public

    Book for documentation, tutorial and protocols of the Giovannelli Lab.

    TeX 1

  3. biometal_transporters biometal_transporters Public

    Environmental diversity, distribution and evolution of microbial metal ion transport systems

    Shell 1

  4. Basili_et_al_Central_America_Convergent_Margin Basili_et_al_Central_America_Convergent_Margin Public

    Repository containing the data relative to the paper "Shifts in subsurface microbial community structure along the geological features of the Central American Volcanic Arc"

    Jupyter Notebook 1

  5. esa-hackathon esa-hackathon Public

    Repository for the ESA Space Omics Hackathon

    Jupyter Notebook 1

  6. giovannellilab_protocols giovannellilab_protocols Public

    Protocols used in the Giovannelli Lab

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Repositories

Showing 10 of 39 repositories
  • pipeline-hmm Public

    Pipeline for generating HMM profiles and functionally annotating with them.

    giovannellilab/pipeline-hmm’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 2 0 Updated Dec 20, 2024
  • Geomosaic Public

    A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis

    giovannellilab/Geomosaic’s past year of commit activity
    Python 3 CC-BY-SA-4.0 1 0 0 Updated Dec 19, 2024
  • media-prediction Public

    Prediction of media requirements for microbial species

    giovannellilab/media-prediction’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 7 0 Updated Nov 25, 2024
  • esa-hackathon Public

    Repository for the ESA Space Omics Hackathon

    giovannellilab/esa-hackathon’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 2 0 Updated Oct 17, 2024
  • Selci_et_al_Hot_springs_pathogens Public

    Data and code relative to the Selci et al manuscript about the abundance and antimicrobial resistance of putative pathogens in the Costa Rica hot springs.

    giovannellilab/Selci_et_al_Hot_springs_pathogens’s past year of commit activity
    R 0 0 0 0 Updated Oct 7, 2024
  • PRA_MeltingICE Public

    Repository for the Italian PRA MeltingICE project

    giovannellilab/PRA_MeltingICE’s past year of commit activity
    0 0 0 0 Updated Jul 15, 2024
  • Field_3D-printed_peristaltic_pump Public

    Plans for the portable 3D printed peristaltic pump for field use developed in the Giovannelli Lab

    giovannellilab/Field_3D-printed_peristaltic_pump’s past year of commit activity
    0 0 0 0 Updated Jul 15, 2024
  • giovannellilab.github.io Public

    Book for documentation, tutorial and protocols of the Giovannelli Lab.

    giovannellilab/giovannellilab.github.io’s past year of commit activity
    TeX 1 0 0 0 Updated Jul 14, 2024
  • HYD22_project Public

    Data from the HYD22 expedition to sample hydrogen springs in Italy

    giovannellilab/HYD22_project’s past year of commit activity
    0 0 0 0 Updated Jun 21, 2024
  • Book_microbiology_extreme_env Public

    Repository for the open book on the Microbiology of Extreme Environments

    giovannellilab/Book_microbiology_extreme_env’s past year of commit activity
    Makefile 0 0 0 0 Updated May 22, 2024

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