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mskcc

Here are 8 public repositories matching this topic...

choderalab / yank

An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.

python molecular-dynamics openmm molecular-dynamics-simulation drug-discovery free-energy free-energy-perturbation alchemical-free-energy-calculations mskcc alchemical

Updated Jul 6, 2023
Python

kmezhoud / canceR

💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …

gene gene-sets r cancer tcltk gene-expression methylation mutations cancer-data mskcc gene-mutation gene-methylation

Updated Mar 1, 2024
R

mskcc-omics-workflows / modules

A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC

omics mskcc nf-core nextfl nextflow-dsl2

Updated Dec 2, 2024
Python

TangoJP / mskcc_kaggle

MSKCC Kaggle Competition

text-mining text-classification cancer scikit-learn exploratory-data-analysis kaggle pca gensim mskcc

Updated Feb 16, 2018
Jupyter Notebook

emmcauley / DS_public_data

a collection of notebooks containing analysis and visualization methods with publicly available data

visualization machine-learning cbioportal cancer-genomics pancancer mskcc msk-met met-tropism tgca

Updated Apr 4, 2023
Jupyter Notebook

choderalab / AurA-materials

Code and data for AurA simulations

structural-biology chemical-biology molecular-dynamics computational-biology elife computational-chemistry aurora biorxiv simulated-data umn biophysics mskcc kinase aurora-kinase simulation-data-analyzed

Updated Mar 6, 2018
Jupyter Notebook

pranshu1921 / Personalised-Cancer-Diagnosis

Predict the effect of genetic mutations in cancer tumors and classify them based on text clinical literature.

cancer numpy sklearn pandas seaborn mutations kaggle-competition nltk classification scipy matplotlib nips-2017 mskcc tumor-growth imblearn neutral-mutants genetic-variations mlxtend cancer-tumor

Updated Oct 7, 2020
Jupyter Notebook

niketan108 / Personalized-cancer-diagnosis

Built model to diagnose personalized cancer (case study)

machine-learning cancer svm machine-learning-algorithms ml kaggle logistic-regression multiclass-classification mskcc

Updated Jun 23, 2019
Jupyter Notebook

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