4.22.3

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.22.2

Notes to tag/commit: 4.22.3

Generated: 2024-02-07

New Features

• dbgap-study-registration now supports finding a given dbgap study's parent
  study, if one exists. (#209)
• Expose gen3users fuctionality (validate and convert) (#203)

Bug Fixes

• Remove confusing error log that occurs using gen3 discovery publish
  (#205)
• Fixes issue with merge_bucket_manifests where the order of input manifests
  would inconsistent (and incorrect) merge behavior. (#196)

Improvements

• Update docs build action so the commit it pushes can trigger other GH
  actions (#208)

4.22.2

pyyaml and pfb fixes

move to GH Actions, update some deps

Release Notes

For: uc-cdis/gen3sdk-python
Notes since tag: 4.22.0
Notes to tag/commit: 0e0bf46
Generated: 2023-10-16

Improvements

• don't try to push docs on master push (#199)
• move unit testing to GH Actions (#198)

Dependency Updates

• update urllib3, pandas and others (#198)

Utils for cascading authorization

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.21.0

Notes to tag/commit: 4.22.0

Generated: 2023-09-01

New Features

• Adds support for querying the dbGaP Study Registration API for child
  studies. (#190)

Improvements

• Updates dbgap_study_registration to include the study's accession in
  get_metadata_for_ids return. (#190)

Improved drs-pull

Release Notes

For: uc-cdis/gen3sdk-python
Notes since tag: 4.20.5
Notes to tag/commit: 2c07651
Generated: 2023-08-24

New Features

• new drs-pull objects command which accepts a list of DRS IDs instead of a
  single one like drs-pull object (#195)
• new --silent arg to silence all logging and only let click.echo's
  through to stdout (this enables the ability to ensure a consistent stdout
  response to pipe real consistent results to other commands, e.g. a gen3 --silent drs-pull object dg.4503/foobar | jq will always pipe the JSON
  output into jq (#195)

More DOI resourceType and resourceTypeGeneral fixes

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.20.4

Notes to tag/commit: 4.20.5

Generated: 2023-08-22

Bug Fixes

• DOI: resourceType and resourceTypeGeneral are now being correctly
  parsed from datacite response into gen3 metadata (#194)

DOI Type and General Type fixes

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.20.3

Notes to tag/commit: 36105c1

Generated: 2023-08-09

Improvements

• DOI: doi_type now is a truly free-text field (#193)

Bug Fixes

• DOI: rename old doi_type to doi_type_general to correctly indicate that is
  a enum field instead of free-text field (#193)
• DOI: fixed the default value for description_type (#193)

Minor DOI updates

Release Notes

For: uc-cdis/gen3sdk-python
Notes since tag: 4.20.2
Notes to tag/commit: 3bcd587
Generated: 2023-08-03

Improvements

• spelling correction on resolvable link field for DOIs (#192)

DOI Updates

Release Notes

For: uc-cdis/gen3sdk-python
Notes since tag: 4.20.0
Notes to tag/commit: 458e06d
Generated: 2023-07-27

Bug Fixes

• Fixed an error caused by calling a variable before defining it (#189)

Improvements

• delimit lists in DOI citation with & so commas in last,first name don't
  cause confusion (#191)

Support for discovery objects metadata and DOI minting and parsing from external sources

Release Notes

For: uc-cdis/gen3sdk-python
Notes since tag: 4.19.1
Notes to tag/commit: 81851a4
Generated: 2023-07-10

New Features

• discovery objects READ, PUBLISH, and DELETE (#188)
• External interface to dbGaP's Study Registration API (#183)
• External interface / abstraction for getting all DOI related metadata from
  dbGaP's APIs (#183)
• High level function for automatically getting all necessary DOI metadata
  for dbGaP datasets, updating/creating DOIs, and updating Gen3's Metadata
  API with the necessary information (#183)

Improvements

• Refactor/organization of external metadata interfaces and a new
  ExternalMetadataSourceInterface class to inherit from (#183)