4.12.2

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.12.1

Notes to tag/commit: 4.12.2

Generated: 2022-08-02

Improvements

• Add ability to clean url by removing trailing slashes and whitespaces from
  user input (#150)

4.12.1

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.12.0

Notes to tag/commit: 4.12.1

Generated: 2022-07-27

Bug Fixes

• Updating version to 4.12.1 to make sure pip pick up the logging change.
  (#149)

4.12.0

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.11.3

Notes to tag/commit: 4.12.0

Generated: 2022-07-26

Improvements

• Hide metadata call 404 error when attempting to unpack packages and only
  show custom logs instead. (#147)
• Fix backoff behavior to not retry after receiving 404 error. (#147)
• Disable Backoff default logger and only show custom logs (#147)
• Allow to specify guid_type for gen3 discovery publish CLI command (#127)
• Change drs download mds call to use default python
  request.raise_for_status() instead of gen3utils version. (#144)
• renamed gen3utils raise_for_status() to raise_for_status_and_print_error()
  for clarity. Refactored code. (#144)

New Features

• Add ability to publish unregistered metadata for gen3 discovery publish
  CLI command (#127)

Bug Fixes

• Change release tag to 4.12.0 (#146)

4.11.3

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.11.2

Notes to tag/commit: 4.11.3

Generated: 2022-07-19

New Features

• Updating dependencies for drsclient and httpx to address vulnerabilities
  (#145)

Dependency Updates

• drsclient = ^0.2.2 (#145)

• httpx = 0.23.0 (#145)

Release 4.11.2 improved error messages for new WTS feature

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.11.1

Notes to tag/commit: 4.11.2

Generated: 2022-07-13

Improvements

• Logging and error improvement. (#141)

Gen3Auth WTS Update

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.10.1

Notes to tag/commit: 4.11.1

Generated: 2022-07-12

New Features

• Gen3Auth can now communicate with external WTS instances (#140)
• Gen3Auth can obtain access token to target Gen3 commons based on user
  specified endpoint parameter (#140)
• Gen3Auth will set endpoint correctly based on user input (#140)
• Optional argument to indexing to allow not creating a metadata column if
  there's no value in that row (to support diff metadata for diff rows
  without ending up with a ton of empty columns in each) (#139)

Bug Fixes

• This fixes an issue in the indexing verify step of the BDCat release
  automation script, where the log file would be created in an unexpected
  location (#138)

Update dependencies

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.10.0

Notes to tag/commit: 4.10.1

Generated: 2022-06-10

Bug Fixes

• Catch and log warning if manifest verify doesnt find index record (#133)

Improvements

• update deps, use common utils function in documentation and code (#137)

Dependency cleanup, Python 3.9, some new CLI functionality

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.9.4

Notes to tag/commit: 4.10.0

Generated: 2022-06-09

New Features

• Download manifest support for providing an input manifest, which will only
  query indexd for the checksums from that input (instead of downloading all
  records) (#131)

Breaking Changes

• no longer support python 3.6, 3.7, or 3.8 for a few reasons. pandas no
  longer supports 3.6 or 3.7 and pandas is required for the core SDK
  functionality of submitting files (we may replace pandas in the future, but
  for now this is a limitation). Python >3.8 is required by indexd and some
  supporting indexdclient libraries going forward (as we're updating all
  services to 3.9) (#131)

Bug Fixes

• upgrade black in pre-commit hooks to avoid issue with newer python
  versions (#131)

Improvements

• ensure 3.9 is specified in all necessary places for release to PyPI (#135)
• refactor utility functions into utils files (#131)

Dependency Updates

• many updates, see diff. Things had not been updated in a while (#131)

4.9.4

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.9.3

Notes to tag/commit: 4.9.4

Generated: 2022-06-06

Improvements

• _resource_paths, _uploader_id, _buckets, _filename and
  _file_extension will not be added to package metadata anymore (#134)

Gen3SDK Delete Objects API update

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.9.2

Notes to tag/commit: 4.9.3

Generated: 2022-05-12

Bug Fixes

• Failing Delete Objects SDK feature. (#130)