Gen3 Auth WTS Update

Release Notes

For: uc-cdis/gen3sdk-python
Notes since tag: 4.18.0
Notes to tag/commit: b8585a8
Generated: 2023-06-09

Bug Fixes

Fix issue of idp value not being correctly determined when contacting local cluster WTS (https://ctds-planx.atlassian.net/browse/BRH-541)

Improvements

Add debug log to Gen3 Auth to facilitate future debugging.

DOI support

Release Notes

For: uc-cdis/gen3sdk-python
Notes since tag: 4.17.2
Notes to tag/commit: 1a08a42
Generated: 2023-04-28

New Features

• DOI Support (DOI-related classes, Wrapper class against DataCite's API,
  persistence of DOI metadata in Gen3 Metadata API) (#172)

Improvements

• Move some commonly used logic to util functions (#172)

Display Success/Failure messages for DRS object download

Release Notes

For: uc-cdis/gen3sdk-python
Tag: 4.17.2
Generated: 2023-04-03

Improvements

• Update DRS download module to use default -v and -vv log flags
• Display Success/Failure messages for DRS object download

small improvement on read manifest functionality

Release Notes

For: uc-cdis/gen3sdk-python
Notes since tag: 4.17.0
Notes to tag/commit: 55c4763
Generated: 2023-02-20

Improvements

• expand download options to include the python command you want to use for
  subprocesses (since some machines only have 'python3' and not 'python')
  (#176)

4.17.0

New Features

Add new utility functions to download data

• get a list of project_ids you have access to in a data commons.
• gets a TSV of the structured data from particular node for each project specified. Also creates a master TSV of merged data from each project for the specified node. Returns a DataFrame containing the merged data for the specified node.
• gets a TSV for every node in a specified project. Function returns a list of the contents of the directory. Exports TSV files into a directory "project_tsvs/ by default.

4.16.1

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.16.0

Notes to tag/commit: 4.16.1

Generated: 2022-12-15

Bug Fixes

• Fix Gen3File.download_single (#171)

Client credentials support

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.15.0

Notes to tag/commit: 4.16.0

Generated: 2022-12-14

New Features

• Add client credentials support to Gen3Auth: Gen3Auth(endpoint="", client_credentials=("client ID", "client secret")) (#167)
• Add comand to display Gen3 SDK version number in terminal (#165)

4.15.0

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.14.0

Notes to tag/commit: 4.15.0

Generated: 2022-11-01

New Features

• Add single file download function and CLI command (#155)
• Gen3File.upload_file() now accepts a bucket parameter to specify the S3
  bucket to upload to (#160)
• Add function Gen3File.upload_file_to_guid() to upload a file for the
  specified existing GUID (#160)

Bug Fixes

• Ensure params are passed correctly for manifest publishing (#161)
• Ensure calls to API are constructed correctly for creating and updating
  records (Gen3Index.async_create_record and
  Gen3Index.async_update_record) (#161)
• Fix backoff max number of tries override with GEN3SDK_MAX_RETRIES
  environment variable (#161)
• Checkout v2 step in doc action has a known bug in not allowing forked
  branch to be fetched for actions.
  actions/checkout#455. This is a fix (#159)

Improvements

• Removing Veracode scanning pipeline (#163, #164)
• allow publish_discovery_metadata() to update existing registered
  discovery metadata without resetting it (#162)

Alias support

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.13.0

Notes to tag/commit: 4.14.0

Generated: 2022-09-15

New Features

• Metadata Alias support for existing functions, new functions for new alias
  API (#154)
• updating poetry install in .travis.yml (#156)

Bug Fixes

• pip install poetry, don't use deprecated install script (#154)

Dependency Updates

• Explicitly list required cdislogging dependency in the project
  dependencies (#152)

initial crosswalk metadata support

Release Notes

For: uc-cdis/gen3sdk-python

Notes since tag: 4.12.2

Notes to tag/commit: 4.13.0

Generated: 2022-08-10

New Features

• publish crosswalk initial support, tests, and docs (#151)