Merge pull request #595 from umccr/bugfix/add-cl-config-to-interop-qc…

…-report Added hg38 genome size to multiqc cl config
umccr · Nov 19, 2024 · 5c66639 · 5c66639
2 parents 7c3928e + fd7f57d
commit 5c66639
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Showing 2 changed files with 6 additions and 1 deletion.
diff --git a/config/workflow.yaml b/config/workflow.yaml
@@ -309,7 +309,7 @@ workflows:
         md5sum: 6e20bae050dfae264c00cdc8a2be0bbf
       - name: 1.3.1--1.21
         path: 1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl
-        md5sum: 53ddc08bf654bf03bffc7edb4a3ccdf6
+        md5sum: dfad0c0195611d1ff0ca6a255955fc00
     categories: []
   - name: dragen-instrument-run-fastq-to-ora-pipeline
     path: dragen-instrument-run-fastq-to-ora-pipeline

diff --git a/workflows/bclconvert-interop-qc/1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl b/workflows/bclconvert-interop-qc/1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl
@@ -112,6 +112,11 @@ steps:
       title:
         source: instrument_run_id
         valueFrom: "$(self) BCLConvert MultiQC Report"
+      cl_config:
+        valueFrom: |
+          ${
+             return JSON.stringify({"bclconvert": { "genome_size": "hg38_genome" }});
+           }
     out:
       - id: output_directory
       - id: output_file