Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Added hg38 genome size to multiqc cl config #595

Merged
merged 1 commit into from
Nov 19, 2024
Merged

Added hg38 genome size to multiqc cl config #595

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion config/workflow.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -309,7 +309,7 @@ workflows:
md5sum: 6e20bae050dfae264c00cdc8a2be0bbf
- name: 1.3.1--1.21
path: 1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl
md5sum: 53ddc08bf654bf03bffc7edb4a3ccdf6
md5sum: dfad0c0195611d1ff0ca6a255955fc00
categories: []
- name: dragen-instrument-run-fastq-to-ora-pipeline
path: dragen-instrument-run-fastq-to-ora-pipeline
Expand Down
5 changes: 5 additions & 0 deletions workflows/bclconvert-interop-qc/1.3.1--1.21/bclconvert-interop-qc__1.3.1--1.21.cwl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -112,6 +112,11 @@ steps:
title:
source: instrument_run_id
valueFrom: "$(self) BCLConvert MultiQC Report"
cl_config:
valueFrom: |
${
return JSON.stringify({"bclconvert": { "genome_size": "hg38_genome" }});
}
out:
- id: output_directory
- id: output_file
Expand Down
Loading