Merge pull request #34 from umccr/enhancement/illumina-interop

Added stand-alone illumina interop docker image

repositories/illumina-interop/1.3.1/Dockerfile

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+FROM continuumio/miniconda3:23.10.0-1
+
+LABEL author="Alexis Lucattini" \
+      description="Runs illumina-interop" \
+      maintainer="[email protected]"
+
+ARG ILLUMINA_INTEROP_VERSION="1.3.1"
+
+RUN conda config --prepend channels conda-forge && \
+    conda install -c bioconda illumina-interop=="${ILLUMINA_INTEROP_VERSION}" && \
+    find /opt/conda/ -follow -type f -name '*.a' -delete && \
+    find /opt/conda/ -follow -type f -name '*.pyc' -delete && \
+    /opt/conda/bin/conda clean --yes \
+        --all \
+        --force-pkgs-dirs
+
+# Reset entrypoint to null for cwl
+ENTRYPOINT []
+
+# Set cwd to multiqc
+CMD []

repositories/illumina-interop/1.3.1/Readme.md

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+# illumina-interop
+
+## Version 1.3.1
+
+## Package link
+[docker-who/illumina-interop](https://github.com/umccr/docker-who/pkgs/container/illumina-interop)
+
+## Platforms
+* linux/amd64
+
+### Usage
+Run illumina interop commands such as 'interop_index-summary' or 'interop_summary'
+
+```bash
+docker pull ghcr.io/umccr/interop:1.3.1
+```
+
+### Description
+
+Official interop documentation can be found [here](https://illumina.github.io/interop/index.html).

repositories/illumina-interop/1.3.1/config.yaml

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+# Specify particular platforms to build
+platforms:
+  - linux/amd64