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Release 0.7.0

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@pdiakumis pdiakumis released this 15 Feb 09:17
· 495 commits to main since this release

Summary

Mostly added use cases based on requests from the curation team related to
umccrise (CHORD, HRDetect, QC summary), PCGR, and MultiQC.

Deployments

  • 🐳 Docker Image: v0.7.0
  • 🐍 Conda package: v0.7.0

Details

  • ⭐ Additions:

    • R functions:
      • umccr_tidy: workhorse that handles the tidying and method dispatch.
      • gds_file_presignedurl
    • R6 classes:
      • PcgrJsonFile
      • PcgrTiersFile
      • UmChordTsvFile
      • UmHrdetectTsvFile
      • UmQcSumFile
      • UmSigsSnvFile
      • MultiqcFile
  • πŸ”§ Fixes:

    • Updated README with unified dracarys tidy CLI.
    • Added a fun column to FILE_REGEX for handling method dispatch.
    • GH Actions: Remove linux/arm64 from docker since conda pkgs don't generally have ARM64 equivalents.
    • GH Actions: use "miniforge-variant: Mambaforge"
      (see this issue).
  • 🌴 Pull Requests Merged: