Update event outputs for holmes extract completion

umccr · Nov 20, 2024 · 099f94f · 099f94f
1 parent e683ffd
commit 099f94f
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Showing 2 changed files with 12 additions and 12 deletions.
diff --git a/.../step_functions_templates/cttsov2_complete_to_holmes_bam_extraction_sfn_template.asl.json b/.../step_functions_templates/cttsov2_complete_to_holmes_bam_extraction_sfn_template.asl.json
@@ -203,18 +203,18 @@
       "Parameters": {
         "Entries": [
           {
+            "EventBusName": "${__event_bus_name__}",
+            "DetailType": "${__detail_type__}",
+            "Source": "${__event_source__}",
             "Detail": {
               "status": "${__event_status__}",
               "payload": {
                 "data": {
-                  "libraryId.$": "$.extract_inputs.individual_id",
-                  "outputs.$": "$.launch_holmes_extract_step.Output"
+                  "library.$": "$.workflow_inputs.linkedLibraries[0]",
+                  "bamFiles.$": "States.Array($.extract_inputs.alignment_bam)"
                 }
               }
-            },
-            "DetailType": "${__detail_type__}",
-            "EventBusName": "${__event_bus_name__}",
-            "Source": "${__event_source__}"
+            }
           }
         ]
       },

diff --git a/...olmes-extract-event/step_functions_templates/holmes_extract_wrapper_sfn_template.asl.json b/...olmes-extract-event/step_functions_templates/holmes_extract_wrapper_sfn_template.asl.json
@@ -270,18 +270,18 @@
       "Parameters": {
         "Entries": [
           {
+            "EventBusName": "${__event_bus_name__}",
+            "DetailType": "${__detail_type__}",
+            "Source": "${__event_source__}",
             "Detail": {
               "status": "${__event_status__}",
               "payload": {
                 "data": {
-                  "libraryId.$": "$.extract_inputs.individual_id",
-                  "outputs.$": "$.launch_holmes_extract_step.Output"
+                  "library.$": "$.payload.data.library",
+                  "bamFiles.$": "$.extract_inputs.alignment_bams"
                 }
               }
-            },
-            "DetailType": "${__detail_type__}",
-            "EventBusName": "${__event_bus_name__}",
-            "Source": "${__event_source__}"
+            }
           }
         ]
       },