Force enable map align to true for both germline and somatic but set …

…output to false
umccr · Jul 29, 2024 · 1305488 · 1305488
1 parent 874ac6a
commit 1305488
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/...das/get_boolean_parameters_from_event_input_py/get_boolean_parameters_from_event_input.py b/...das/get_boolean_parameters_from_event_input_py/get_boolean_parameters_from_event_input.py
@@ -19,7 +19,9 @@ def handler(event, context) -> Dict[str, Dict]:
 
     # Get the boolean parameters from the event input
     cwl_parameter_dict: Dict = {
+        "enable_map_align_somatic": True,
         "enable_map_align_output_somatic": event_data_input.get('enableMapAlignOutput', True),
+        "enable_map_align_germline": True,
         "enable_map_align_output_germline": False,
         "enable_duplicate_marking": event_data_input.get('enableDuplicateMarking', True),
         "enable_cnv_somatic": event_data_input.get('enableCnvSomatic', None),