Merge pull request #59 from umccr/trim_relocate

Remove _deprecated
umccr · Nov 20, 2023 · 301592b · 301592b
2 parents a0ec9a0 + a9c53ea
commit 301592b
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diff --git a/.gitignore b/.gitignore
@@ -1,5 +1,6 @@
 # Distribution / packaging
 .Python
+.build
 package-lock.json
 
 # Put stuffs here for your local dev specific purpose

diff --git a/...rkload/stateless/filemanager/.env.example → ...orkload/stateful/filemanager/.env.example b/...rkload/stateless/filemanager/.env.example → ...orkload/stateful/filemanager/.env.example
diff --git a/...workload/stateless/filemanager/.gitignore → lib/workload/stateful/filemanager/.gitignore b/...workload/stateless/filemanager/.gitignore → lib/workload/stateful/filemanager/.gitignore
diff --git a/...workload/stateless/filemanager/Cargo.lock → lib/workload/stateful/filemanager/Cargo.lock b/...workload/stateless/filemanager/Cargo.lock → lib/workload/stateful/filemanager/Cargo.lock
diff --git a/...workload/stateless/filemanager/Cargo.toml → lib/workload/stateful/filemanager/Cargo.toml b/...workload/stateless/filemanager/Cargo.toml → lib/workload/stateful/filemanager/Cargo.toml
diff --git a/lib/workload/stateless/filemanager/README.md → lib/workload/stateful/filemanager/README.md b/lib/workload/stateless/filemanager/README.md → lib/workload/stateful/filemanager/README.md
diff --git a/lib/workload/stateless/filemanager/build.rs → lib/workload/stateful/filemanager/build.rs b/lib/workload/stateless/filemanager/build.rs → lib/workload/stateful/filemanager/build.rs
diff --git a/...stateless/filemanager/database/Dockerfile → .../stateful/filemanager/database/Dockerfile b/...stateless/filemanager/database/Dockerfile → .../stateful/filemanager/database/Dockerfile
diff --git a/...base/migrations/0001_add_object_table.sql → ...base/migrations/0001_add_object_table.sql b/...base/migrations/0001_add_object_table.sql → ...base/migrations/0001_add_object_table.sql
diff --git a/...e/migrations/0002_add_s3_object_table.sql → ...e/migrations/0002_add_s3_object_table.sql b/...e/migrations/0002_add_s3_object_table.sql → ...e/migrations/0002_add_s3_object_table.sql
diff --git a/...ueries/ingester/aws/insert_s3_objects.sql → ...ueries/ingester/aws/insert_s3_objects.sql b/...ueries/ingester/aws/insert_s3_objects.sql → ...ueries/ingester/aws/insert_s3_objects.sql
diff --git a/...abase/queries/ingester/insert_objects.sql → ...abase/queries/ingester/insert_objects.sql b/...abase/queries/ingester/insert_objects.sql → ...abase/queries/ingester/insert_objects.sql
diff --git a/...abase/queries/ingester/update_deleted.sql → ...abase/queries/ingester/update_deleted.sql b/...abase/queries/ingester/update_deleted.sql → ...abase/queries/ingester/update_deleted.sql
diff --git a/...ad/stateless/filemanager/deploy/README.md → ...oad/stateful/filemanager/deploy/README.md b/...ad/stateless/filemanager/deploy/README.md → ...oad/stateful/filemanager/deploy/README.md
diff --git a/...anager/deploy/aws-get-filemanager-logs.sh → ...anager/deploy/aws-get-filemanager-logs.sh b/...anager/deploy/aws-get-filemanager-logs.sh → ...anager/deploy/aws-get-filemanager-logs.sh
diff --git a/...oad/stateless/filemanager/deploy/cdk.json → ...load/stateful/filemanager/deploy/cdk.json b/...oad/stateless/filemanager/deploy/cdk.json → ...load/stateful/filemanager/deploy/cdk.json
diff --git a/...ploy/localstack/filemanager_localstack.ts → ...ploy/localstack/filemanager_localstack.ts b/...ploy/localstack/filemanager_localstack.ts → ...ploy/localstack/filemanager_localstack.ts
@@ -13,7 +13,6 @@ new FilemanagerStack(
   STACK_NAME,
   {
     database_url: 'postgresql://filemanager:filemanager@db:5432/filemanager', // pragma: allowlist secret
-
     endpoint_url: 'http://localstack:4566',
     force_path_style: true,
     stack_name: STACK_NAME,

diff --git a/...less/filemanager/deploy/package-lock.json → ...eful/filemanager/deploy/package-lock.json b/...less/filemanager/deploy/package-lock.json → ...eful/filemanager/deploy/package-lock.json
diff --git a/...stateless/filemanager/deploy/package.json → .../stateful/filemanager/deploy/package.json b/...stateless/filemanager/deploy/package.json → .../stateful/filemanager/deploy/package.json
diff --git a/...anager/deploy/redeploy_test_localstack.sh → ...anager/deploy/redeploy_test_localstack.sh b/...anager/deploy/redeploy_test_localstack.sh → ...anager/deploy/redeploy_test_localstack.sh
diff --git a/...manager/deploy/stack/filemanager_stack.ts → ...manager/deploy/stack/filemanager_stack.ts b/...manager/deploy/stack/filemanager_stack.ts → ...manager/deploy/stack/filemanager_stack.ts
diff --git a/...tateless/filemanager/deploy/tsconfig.json → ...stateful/filemanager/deploy/tsconfig.json b/...tateless/filemanager/deploy/tsconfig.json → ...stateful/filemanager/deploy/tsconfig.json
diff --git a/.../stateless/filemanager/docker-compose.yml → ...d/stateful/filemanager/docker-compose.yml b/.../stateless/filemanager/docker-compose.yml → ...d/stateful/filemanager/docker-compose.yml
diff --git a/...anager/filemanager-http-lambda/Cargo.toml → ...anager/filemanager-http-lambda/Cargo.toml b/...anager/filemanager-http-lambda/Cargo.toml → ...anager/filemanager-http-lambda/Cargo.toml
diff --git a/...manager/filemanager-http-lambda/README.md → ...manager/filemanager-http-lambda/README.md b/...manager/filemanager-http-lambda/README.md → ...manager/filemanager-http-lambda/README.md
diff --git a/...nager/filemanager-http-lambda/src/main.rs → ...nager/filemanager-http-lambda/src/main.rs b/...nager/filemanager-http-lambda/src/main.rs → ...nager/filemanager-http-lambda/src/main.rs
diff --git a/...ager/filemanager-ingest-lambda/Cargo.toml → ...ager/filemanager-ingest-lambda/Cargo.toml b/...ager/filemanager-ingest-lambda/Cargo.toml → ...ager/filemanager-ingest-lambda/Cargo.toml
diff --git a/...nager/filemanager-ingest-lambda/README.md → ...nager/filemanager-ingest-lambda/README.md b/...nager/filemanager-ingest-lambda/README.md → ...nager/filemanager-ingest-lambda/README.md
diff --git a/...ger/filemanager-ingest-lambda/src/main.rs → ...ger/filemanager-ingest-lambda/src/main.rs b/...ger/filemanager-ingest-lambda/src/main.rs → ...ger/filemanager-ingest-lambda/src/main.rs
diff --git a/...teless/filemanager/filemanager/Cargo.lock → ...ateful/filemanager/filemanager/Cargo.lock b/...teless/filemanager/filemanager/Cargo.lock → ...ateful/filemanager/filemanager/Cargo.lock
diff --git a/...teless/filemanager/filemanager/Cargo.toml → ...ateful/filemanager/filemanager/Cargo.toml b/...teless/filemanager/filemanager/Cargo.toml → ...ateful/filemanager/filemanager/Cargo.toml
diff --git a/...ateless/filemanager/filemanager/README.md → ...tateful/filemanager/filemanager/README.md b/...ateless/filemanager/filemanager/README.md → ...tateful/filemanager/filemanager/README.md
diff --git a/...lemanager/filemanager/src/database/mod.rs → ...lemanager/filemanager/src/database/mod.rs b/...lemanager/filemanager/src/database/mod.rs → ...lemanager/filemanager/src/database/mod.rs
diff --git a/...r/filemanager/src/database/s3/ingester.rs → ...r/filemanager/src/database/s3/ingester.rs b/...r/filemanager/src/database/s3/ingester.rs → ...r/filemanager/src/database/s3/ingester.rs
diff --git a/...anager/filemanager/src/database/s3/mod.rs → ...anager/filemanager/src/database/s3/mod.rs b/...anager/filemanager/src/database/s3/mod.rs → ...anager/filemanager/src/database/s3/mod.rs
diff --git a/...teless/filemanager/filemanager/src/env.rs → ...ateful/filemanager/filemanager/src/env.rs b/...teless/filemanager/filemanager/src/env.rs → ...ateful/filemanager/filemanager/src/env.rs
diff --git a/...less/filemanager/filemanager/src/error.rs → ...eful/filemanager/filemanager/src/error.rs b/...less/filemanager/filemanager/src/error.rs → ...eful/filemanager/filemanager/src/error.rs
diff --git a/...filemanager/filemanager/src/events/mod.rs → ...filemanager/filemanager/src/events/mod.rs b/...filemanager/filemanager/src/events/mod.rs → ...filemanager/filemanager/src/events/mod.rs
diff --git a/...ager/filemanager/src/events/s3/collect.rs → ...ager/filemanager/src/events/s3/collect.rs b/...ager/filemanager/src/events/s3/collect.rs → ...ager/filemanager/src/events/s3/collect.rs
diff --git a/...emanager/filemanager/src/events/s3/mod.rs → ...emanager/filemanager/src/events/s3/mod.rs b/...emanager/filemanager/src/events/s3/mod.rs → ...emanager/filemanager/src/events/s3/mod.rs
diff --git a/...er/filemanager/src/events/s3/s3_client.rs → ...er/filemanager/src/events/s3/s3_client.rs b/...er/filemanager/src/events/s3/s3_client.rs → ...er/filemanager/src/events/s3/s3_client.rs
diff --git a/...r/filemanager/src/events/s3/sqs_client.rs → ...r/filemanager/src/events/s3/sqs_client.rs b/...r/filemanager/src/events/s3/sqs_client.rs → ...r/filemanager/src/events/s3/sqs_client.rs
diff --git a/...teless/filemanager/filemanager/src/lib.rs → ...ateful/filemanager/filemanager/src/lib.rs b/...teless/filemanager/filemanager/src/lib.rs → ...ateful/filemanager/filemanager/src/lib.rs
diff --git a/lib/workload/stateless/_deprecated/bcl_convert/component.ts b/lib/workload/stateless/_deprecated/bcl_convert/component.ts
diff --git a/lib/workload/stateless/_deprecated/bcl_convert/runtime/bcl_convert.py b/lib/workload/stateless/_deprecated/bcl_convert/runtime/bcl_convert.py
diff --git a/lib/workload/stateless/_deprecated/bcl_convert/tests/__init__.py b/lib/workload/stateless/_deprecated/bcl_convert/tests/__init__.py
diff --git a/lib/workload/stateless/_deprecated/bcl_convert/tests/test_bcl_convert.py b/lib/workload/stateless/_deprecated/bcl_convert/tests/test_bcl_convert.py
diff --git a/lib/workload/stateless/_deprecated/dragen_wgs_qc/component.ts b/lib/workload/stateless/_deprecated/dragen_wgs_qc/component.ts
diff --git a/lib/workload/stateless/_deprecated/dragen_wgs_qc/runtime/dragen_wgs_qc.py b/lib/workload/stateless/_deprecated/dragen_wgs_qc/runtime/dragen_wgs_qc.py
diff --git a/lib/workload/stateless/_deprecated/dragen_wgs_somatic/component.ts b/lib/workload/stateless/_deprecated/dragen_wgs_somatic/component.ts
diff --git a/lib/workload/stateless/_deprecated/dragen_wgs_somatic/runtime/dragen_wgs_somatic.py b/lib/workload/stateless/_deprecated/dragen_wgs_somatic/runtime/dragen_wgs_somatic.py
diff --git a/lib/workload/stateless/_deprecated/ens_event_manager/component.ts b/lib/workload/stateless/_deprecated/ens_event_manager/component.ts