Merge pull request #648 from umccr/bugifx/get-num-lanes-from-xml

umccr · Nov 4, 2024 · 4577a31 · 4577a31
2 parents cac8ce0 + 2335fb1
commit 4577a31
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/...d/stateless/stacks/bclconvert-manager/translator_service/helper/runinfo/runinfo_helper.py b/...d/stateless/stacks/bclconvert-manager/translator_service/helper/runinfo/runinfo_helper.py
@@ -90,7 +90,8 @@ def read_runinfo_xml(project_id: str, data_id: str) -> Dict:
                 project_id=project_id,
                 data_id=data_id
             )
-        )
+        ),
+        keep_flowcell_layout=True
     )
 
 

diff --git a/...ess/stacks/bclconvert-manager/translator_service/helper/samplesheet/samplesheet_helper.py b/...ess/stacks/bclconvert-manager/translator_service/helper/samplesheet/samplesheet_helper.py
@@ -120,7 +120,7 @@ def read_v2_samplesheet(
     )
 
     # And now append the lane attribute to every
-    v2_samplesheet_dict['bclconvert_data'] = flatten(
+    v2_samplesheet_dict['bclconvert_data'] = list(flatten(
         map(
             lambda bclconvert_data_row_iter: list(
                 map(
@@ -133,6 +133,6 @@ def read_v2_samplesheet(
             ),
             v2_samplesheet_dict['bclconvert_data']
         ),
-    )
+    ))
 
     return v2_samplesheet_dict
-Original file line number
+Diff line change
@@ Expand Up / @@ -90,7 +90,8 @@ def read_runinfo_xml(project_id: str, data_id: str) -> Dict: @@
                     project_id=project_id,
                     data_id=data_id
                 )
-            )
+            ),
+            keep_flowcell_layout=True
         )
@@ Expand Down @@