fix orcabus_id prefix filter

lib/workload/stateless/stacks/metadata-manager/app/viewsets/base.py

@@ -7,6 +7,7 @@
 
 
 class BaseViewSet(ReadOnlyModelViewSet, ABC):
+    lookup_value_regex = "[^/]+"  # This is to allow for special characters in the URL
     orcabus_id_prefix = ''
     ordering_fields = "__all__"
     ordering = ["-orcabus_id"]
@@ -24,3 +25,14 @@ def retrieve(self, request, *args, **kwargs):
         obj = get_object_or_404(self.queryset, pk=pk)
         serializer = self.serializer_class(obj)
         return Response(serializer.data)
+
+    def get_query_params(self):
+        """
+        Sanitize query params if needed
+        e.g. remove prefixes for each orcabus_id
+        """
+        query_params = self.request.query_params.copy()
+        orcabus_id = query_params.get("orcabus_id", None)
+        if orcabus_id and orcabus_id.startswith(self.orcabus_id_prefix):
+            query_params['orcabus_id'] = orcabus_id[len(self.orcabus_id_prefix):]
+        return query_params

lib/workload/stateless/stacks/metadata-manager/app/viewsets/contact.py

@@ -19,4 +19,5 @@ def list(self, request, *args, **kwargs):
         return super().list(request, *args, **kwargs)
 
     def get_queryset(self):
-        return Contact.objects.get_by_keyword(**self.request.query_params)
+        query_params = self.get_query_params()
+        return Contact.objects.get_by_keyword(**query_params)

lib/workload/stateless/stacks/metadata-manager/app/viewsets/individual.py

@@ -19,4 +19,5 @@ def list(self, request, *args, **kwargs):
         return super().list(request, *args, **kwargs)
 
     def get_queryset(self):
-        return Individual.objects.get_by_keyword(self.queryset, **self.request.query_params)
+        query_params = self.get_query_params()
+        return Individual.objects.get_by_keyword(self.queryset, **query_params)

lib/workload/stateless/stacks/metadata-manager/app/viewsets/library.py

@@ -13,7 +13,7 @@ class LibraryViewSet(BaseViewSet):
 
     def get_queryset(self):
         qs = self.queryset
-        query_params = self.request.query_params.copy()
+        query_params = self.get_query_params()
 
         coverage__lte = query_params.get("coverage__lte", None)
         if coverage__lte:

lib/workload/stateless/stacks/metadata-manager/app/viewsets/project.py

@@ -18,4 +18,5 @@ def list(self, request, *args, **kwargs):
         return super().list(request, *args, **kwargs)
 
     def get_queryset(self):
-        return Project.objects.get_by_keyword(self.queryset, **self.request.query_params)
+        query_params = self.get_query_params()
+        return Project.objects.get_by_keyword(self.queryset, **query_params)

lib/workload/stateless/stacks/metadata-manager/app/viewsets/sample.py

@@ -21,4 +21,5 @@ def list(self, request, *args, **kwargs):
         return super().list(request, *args, **kwargs)
 
     def get_queryset(self):
-        return Sample.objects.get_by_keyword(**self.request.query_params)
+        query_params = self.get_query_params()
+        return Sample.objects.get_by_keyword(**query_params)

lib/workload/stateless/stacks/metadata-manager/app/viewsets/subject.py

@@ -14,7 +14,7 @@ class SubjectViewSet(BaseViewSet):
     def get_queryset(self):
 
         qs = self.queryset
-        query_params = self.request.query_params.copy()
+        query_params = self.get_query_params()
 
         library_id = query_params.get("library_id", None)
         if library_id: