Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add holmes glue #708

Merged
merged 4 commits into from
Nov 21, 2024
Merged

Add holmes glue #708

merged 4 commits into from
Nov 21, 2024

Conversation

alexiswl
Copy link
Member

@alexiswl alexiswl commented Nov 19, 2024

After LibraryQC is complete, trigger the holmes stack to extract all bams from all library lanes.

After cttsov2 is complete, extract the bam file from the logs intermediates folder.

Still need to add index for cttso but sfn template is there ready to go
@alexiswl alexiswl self-assigned this Nov 19, 2024
@alexiswl alexiswl linked an issue Nov 19, 2024 that may be closed by this pull request
@alexiswl alexiswl marked this pull request as ready for review November 20, 2024 01:36
@alexiswl alexiswl force-pushed the feature/add-holmes-glue-service branch from b2ede06 to 70ba6b5 Compare November 20, 2024 01:41
Copy link
Member

@victorskl victorskl left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM

@alexiswl alexiswl merged commit 0ec2581 into main Nov 21, 2024
6 checks passed
@alexiswl alexiswl deleted the feature/add-holmes-glue-service branch November 21, 2024 06:08
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Add holmes stacky service
3 participants