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Jenkins update build 173.
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galaxy-au-tools-jenkins-bot committed Nov 24, 2023
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43 changes: 43 additions & 0 deletions automated_tool_installation_log.tsv
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Expand Up @@ -5981,3 +5981,46 @@ Update 172 16/11/23 23:43:51 scanpy_remove_confounders False Installed iuc 73ab2
Update 172 17/11/23 00:03:25 sklearn_build_pipeline False Installed bgruening 4c4ec859c31a 4c4ec859c31a 18/18 0/0 Statistics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 17/11/23 02:10:27 sklearn_ensemble False Installed bgruening 060ca94ac049 060ca94ac049 12/12 12/12 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 172 17/11/23 02:55:35 sklearn_estimator_attributes False Installed bgruening 30d21a6041f6 30d21a6041f6 8/8 8/8 Statistics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_172/install_log.txt
Update 173 23/11/23 20:22:03 anndata_import False Shed-tools test error iuc 93dd15e13e6a 93dd15e13e6a Staging Testing Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 20:44:40 anndata_inspect False Tests failed iuc 6f0d0c784f09 6f0d0c784f09 Staging Testing 12/16 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 20:54:25 bam_to_sam False Installed devteam a53efedba9e7 a53efedba9e7 3/3 3/3 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 21:33:23 busco False Tests failed iuc 2a5b8b9936bf 2a5b8b9936bf Staging Testing 7/8 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 21:37:21 cat_bins False Tests failed iuc 31853794ace2 31853794ace2 Staging Testing 0/4 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 21:47:06 chipseeker False Tests failed rnateam 8bd92f2404dd 8bd92f2404dd Staging Testing 4/6 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 22:20:38 edger False Tests failed iuc 5bf899c13979 5bf899c13979 Production Testing 13/13 12/13 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 22:22:41 encyclopedia_encyclopedia False Tests failed galaxyp eac99effe86f eac99effe86f Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 22:24:41 encyclopedia_walnut False Tests failed galaxyp 0d2e93e01e68 0d2e93e01e68 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 22:27:45 funannotate_annotate False Tests failed iuc 756376aeb1ae 756376aeb1ae Staging Testing 0/2 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 22:31:20 funannotate_compare False Tests failed iuc e94187d661df e94187d661df Staging Testing 0/3 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 23/11/23 23:33:50 hicexplorer_hicpca False Tests failed bgruening 77919cc3618e 77919cc3618e Production Testing 5/5 1/5 HiCExplorer toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 00:22:19 hifiasm False Installed bgruening 0ee0c3089254 0ee0c3089254 15/15 15/15 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 00:32:29 humann False Tests failed iuc fc6c328c292f fc6c328c292f Staging Testing 3/8 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 00:37:01 humann_rename_table False Tests failed iuc 094ad9c068af 094ad9c068af Staging Testing 2/3 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 00:51:07 keras_model_config False Installed bgruening 4d81e3e2fb63 4d81e3e2fb63 5/5 5/5 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 01:03:25 merqury False Tests failed iuc 09c589057ee8 09c589057ee8 Staging Testing 3/6 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 02:10:39 ml_visualization_ex False Installed bgruening 8334dc98c48e 8334dc98c48e 8/8 8/8 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 03:02:04 ncbi_blast_plus False Tests failed devteam d999e774072a d999e774072a Staging Testing 42/67 Blast + toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 03:04:09 openms_targetedfileconverter False Tests failed galaxyp 9c70a651a53e 9c70a651a53e Staging Testing 0/20 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 03:06:16 openms_xmlvalidator False Tests failed galaxyp f036e8cf1a55 f036e8cf1a55 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 03:16:34 raxml False Installed iuc b1e68bbe4cef b1e68bbe4cef 2/2 0/0 Phylogenetics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 03:35:15 samtools_bedcov False Installed devteam 6856f8a01905 6856f8a01905 7/7 7/7 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 03:38:37 samtools_calmd False Tests failed devteam c89806670ab9 c89806670ab9 Staging Testing 0/2 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 04:28:41 samtools_fastx False Tests failed iuc 66e23b11feae 66e23b11feae Production Testing 18/18 17/18 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 04:37:04 samtools_flagstat False Installed devteam fefd89ab563c fefd89ab563c 3/3 0/0 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 04:44:57 samtools_idxstats False Installed devteam fa5d3e61e429 fa5d3e61e429 2/2 2/2 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 04:54:14 samtools_merge False Installed iuc 65a38e8c8e2a 65a38e8c8e2a 6/6 0/0 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 05:11:04 samtools_mpileup False Installed devteam b61f5d6a7f25 b61f5d6a7f25 6/6 6/6 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 05:19:39 samtools_reheader False Installed devteam d7b4851d1971 d7b4851d1971 2/2 2/2 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 05:28:27 samtools_slice_bam False Installed devteam b5c88b7b153e b5c88b7b153e 3/3 3/3 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 05:56:18 samtools_sort False Installed devteam a577ea614bed a577ea614bed 9/9 9/9 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 06:03:21 samtools_split False Tests failed devteam bd850490c7f1 bd850490c7f1 Production Testing 1/1 0/1 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 06:27:22 samtools_stats False Installed devteam fed4aa48ba09 fed4aa48ba09 13/13 13/13 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 06:59:15 samtools_view False Tests failed iuc 6be888be75f9 6be888be75f9 Staging Testing 29/31 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 07:32:42 scanpy_cluster_reduce_dimension False Tests failed iuc 6acb08931836 6acb08931836 Production Testing 12/12 0/12 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 07:43:10 scanpy_filter False Tests failed iuc a03ff8633507 a03ff8633507 Staging Testing 7/8 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 08:10:28 scanpy_inspect False Installed iuc 3081ff5c84a3 3081ff5c84a3 12/12 12/12 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 08:16:06 scanpy_normalize False Tests failed iuc 94c19fb1281c 94c19fb1281c Staging Testing 2/4 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 10:07:42 scanpy_plot False Installed iuc 9b0cdb8cf6be 9b0cdb8cf6be 34/34 0/0 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 10:18:19 scanpy_remove_confounders False Installed iuc 458e8f43a775 458e8f43a775 2/2 0/0 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 10:34:48 snpeff False Installed iuc 9473cd297a76 9473cd297a76 5/5 5/5 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 11:01:46 sra_tools False Installed iuc e407b9da183a e407b9da183a 20/20 0/0 Get Data toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
79 changes: 40 additions & 39 deletions staging.gvl.org.au/annotation.yml
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Expand Up @@ -2,11 +2,11 @@ tools:
- name: abricate
owner: iuc
revisions:
- 3f3e247c053d
- 78c75f134c16
- c2ef298da409
- 4efdca267d51
- 6e9aea89e388
- 3f3e247c053d
- 78c75f134c16
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: aegean_canongff3
Expand Down Expand Up @@ -36,15 +36,15 @@ tools:
- name: annotatemyids
owner: iuc
revisions:
- 3e1f6f6d557e
- cd2480f35935
- 133f36c29579
- 1aae04680c4b
- b5d8e5475247
- 44018dd6b447
- 4f2967b27e67
- 1aae04680c4b
- f29602ae449e
- fe3ca740a485
- 44018dd6b447
- 3e1f6f6d557e
- 133f36c29579
- cd2480f35935
- f29602ae449e
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: antismash
Expand All @@ -57,17 +57,17 @@ tools:
- name: augustus_training
owner: bgruening
revisions:
- 7be22100e5e1
- dc027fa56d55
- 6519ebe25019
- dc027fa56d55
- 7be22100e5e1
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: augustus
owner: bgruening
revisions:
- 09855551d713
- ca6d970d931c
- 28433faa6e42
- ca6d970d931c
- 09855551d713
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: bakta
Expand All @@ -79,9 +79,9 @@ tools:
- name: barrnap
owner: iuc
revisions:
- 8fd427007e93
- fe48aa4ccd5e
- 7355bbf5e05f
- 8fd427007e93
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: chipseeker
Expand All @@ -99,8 +99,8 @@ tools:
- name: eggnog_mapper
owner: galaxyp
revisions:
- 63662ae295d6
- 9d1fbff733cf
- 63662ae295d6
- d9c3016f7283
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -119,49 +119,49 @@ tools:
- name: funannotate_annotate
owner: iuc
revisions:
- 14f588312c56
- b6b5cd37f2a2
- 9f2455341fac
- 582fd74dc2a1
- 14f588312c56
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_clean
owner: iuc
revisions:
- 989f7c061f35
- a230ea445788
- 0ffe5be70caf
- 989f7c061f35
- 30fb23d4c31c
- 0ffe5be70caf
- 73428a792541
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_compare
owner: iuc
revisions:
- 5a5ae61da69c
- 563a19373357
- 30f08d74024f
- 5a5ae61da69c
- 494f0bb4a993
- 30f08d74024f
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_predict
owner: iuc
revisions:
- 7abc5f6dd595
- 1bc5a03faf2e
- f31125bb85ea
- 2bba2ff070d9
- f31125bb85ea
- d6c7106b7b2e
- 1bc5a03faf2e
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_sort
owner: iuc
revisions:
- 52af33194019
- 520e30695ec3
- b3cf4684e9c7
- 52af33194019
- 54961e026fe4
- d3af38b9c7e1
- 520e30695ec3
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: get_orfs_or_cdss
Expand All @@ -173,9 +173,9 @@ tools:
- name: gff_to_prot
owner: iuc
revisions:
- 2aea122fbd25
- 79261884facd
- 07d7991bf205
- 2aea122fbd25
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: goenrichment
Expand All @@ -187,9 +187,9 @@ tools:
- name: goseq
owner: iuc
revisions:
- 43798b4caee0
- 8b3e3657034e
- ef2ad746b589
- 43798b4caee0
- 602de62d995b
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -216,8 +216,8 @@ tools:
owner: bgruening
revisions:
- c55643c3d813
- 74810db257cc
- 98cafcbd2578
- 74810db257cc
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: jcvi_gff_stats
Expand All @@ -242,16 +242,16 @@ tools:
- name: maker
owner: iuc
revisions:
- d46d803ca6cc
- 3c1a01127868
- 370c210d9541
- 3c1a01127868
- d46d803ca6cc
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mitos2
owner: iuc
revisions:
- 624606f7c996
- 033755194fe9
- 624606f7c996
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mob_suite
Expand All @@ -277,8 +277,8 @@ tools:
revisions:
- bf68eb663bc3
- d643e3b03500
- eaee459f3d69
- a17498c603ec
- eaee459f3d69
- 8a22554cdde2
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand Down Expand Up @@ -311,21 +311,22 @@ tools:
- name: snpeff
owner: iuc
revisions:
- 5a29ab10dba6
- 68693743661e
- 5c7b70713fb5
- 8f92c2b26e6d
- 5c7b70713fb5
- 268d162b9c49
- cfcf33df7fc0
- 5a29ab10dba6
- 5b80f544c67f
- 9473cd297a76
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snpsift
owner: iuc
revisions:
- 09d6806c609e
- 5fab4f81391d
- 2b3e65a4252f
- 5fab4f81391d
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snptools
Expand All @@ -337,8 +338,8 @@ tools:
- name: sortmerna
owner: rnateam
revisions:
- 10b84b577117
- eb35257d2e29
- 10b84b577117
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: tbl2gff3
Expand All @@ -350,15 +351,15 @@ tools:
- name: tbprofiler
owner: iuc
revisions:
- 809dfc93d593
- 2c68b0c38785
- e1a9d6fd258d
- 37213cf56392
- 037a11682176
- 200c378d85f3
- e1a9d6fd258d
- ba6f87115e13
- 45083d070fb8
- ac8250086ac3
- 2c68b0c38785
- 37213cf56392
- ba6f87115e13
- 809dfc93d593
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: transit_gumbel
Expand Down
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