Jenkins update build 221.

usegalaxy-au · Nov 27, 2024 · e26e001 · e26e001
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -8139,3 +8139,12 @@ Update	220	20/11/24 03:19:15	quast	False	Tests failed	iuc	a3b35edea53a	a3b35edea
 Update	220	20/11/24 03:45:35	sniffles	False	Installed	iuc	ceff2f6a5368	ceff2f6a5368		6/6		Variant Calling	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
 Update	220	20/11/24 03:46:17	snpeff	False	Installed	iuc	c7275bd8b4d6	c7275bd8b4d6				Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
 Update	220	20/11/24 04:20:43	tbprofiler	False	Installed	iuc	8cb134b8c1a5	8cb134b8c1a5		4/4		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_220/install_log.txt
+Update	221	27/11/24 01:50:18	abyss	False	Installed	iuc	db9b10824c61	db9b10824c61		3/3		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
+Update	221	27/11/24 02:02:53	infernal	False	Tests failed	bgruening	3711f654044e	3711f654044e	Staging Testing	6/12		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
+Update	221	27/11/24 02:10:14	krakentools_alpha_diversity	False	Tests failed	iuc	78b69342c280	78b69342c280	Staging Testing	3/5		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
+Update	221	27/11/24 02:15:54	krakentools_beta_diversity	False	Installed	iuc	4505d7643673	4505d7643673		3/3		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
+Update	221	27/11/24 02:16:35	krakentools_combine_kreports	False	Installed	iuc	3d2cffa2c4ab	3d2cffa2c4ab				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
+Update	221	27/11/24 02:31:03	krakentools_extract_kraken_reads	False	Installed	iuc	4bf1e2701504	4bf1e2701504		11/11		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
+Update	221	27/11/24 02:35:46	krakentools_kreport2krona	False	Installed	iuc	02bbace216f2	02bbace216f2		2/2		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
+Update	221	27/11/24 02:41:27	krakentools_kreport2mpa	False	Installed	iuc	d33cf727ed94	d33cf727ed94		3/3		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
+Update	221	27/11/24 03:00:28	quast	False	Tests failed	iuc	a3b35edea53a	a3b35edea53a	Staging Testing	11/13		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -4,23 +4,23 @@ tools:
   revisions:
   - 3f3e247c053d
   - 6e9aea89e388
-  - c2ef298da409
   - 4efdca267d51
+  - c2ef298da409
   - 78c75f134c16
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - 3f438bf5475d
   - c45c9dd066e2
+  - 3f438bf5475d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
   owner: iuc
   revisions:
-  - 1dd7adc21b6d
   - 8dc7512c9dc9
+  - 1dd7adc21b6d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_locuspocus
@@ -40,16 +40,16 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 133f36c29579
-  - fe3ca740a485
+  - a79ee60b6926
   - b5d8e5475247
+  - fe3ca740a485
+  - 4f2967b27e67
+  - 1aae04680c4b
+  - 133f36c29579
   - 3e1f6f6d557e
   - 44018dd6b447
   - cd2480f35935
-  - a79ee60b6926
-  - 4f2967b27e67
   - f29602ae449e
-  - 1aae04680c4b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -62,36 +62,36 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
+  - f1e653756174
+  - 6519ebe25019
   - 7be22100e5e1
   - dc027fa56d55
-  - 6519ebe25019
-  - f1e653756174
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - bd0e53f3a891
-  - 09855551d713
   - 28433faa6e42
   - ca6d970d931c
+  - bd0e53f3a891
+  - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
+  - 92eee5f31117
+  - 728dacaf08a9
   - d77802fe76f7
   - da5f1924bb2e
-  - 728dacaf08a9
-  - 92eee5f31117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - 7355bbf5e05f
   - fe48aa4ccd5e
   - 8fd427007e93
+  - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -103,8 +103,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 1b9a9409831d
   - 8bd92f2404dd
+  - 1b9a9409831d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: compleasm
@@ -125,8 +125,8 @@ tools:
   owner: galaxyp
   revisions:
   - 9d1fbff733cf
-  - d9c3016f7283
   - 63662ae295d6
+  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -156,61 +156,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
+  - 3bbe70fef6df
+  - b6b5cd37f2a2
   - 14f588312c56
   - 756376aeb1ae
-  - b6b5cd37f2a2
   - 9f2455341fac
   - 9c15ca7e764e
-  - 3bbe70fef6df
   - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
   - a230ea445788
-  - 0ffe5be70caf
-  - 1691af4a0d17
-  - 73428a792541
-  - 989f7c061f35
   - 8e1ace8f77c6
+  - 989f7c061f35
+  - 73428a792541
+  - 1691af4a0d17
   - 30fb23d4c31c
+  - 0ffe5be70caf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 0418d28136de
   - 5a5ae61da69c
-  - 30f08d74024f
-  - 494f0bb4a993
-  - 563a19373357
   - e94187d661df
+  - 494f0bb4a993
+  - 0418d28136de
   - 57c6718cbfcc
+  - 563a19373357
+  - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - d6c7106b7b2e
   - f77d7b685bb3
+  - 1bc5a03faf2e
+  - d6c7106b7b2e
   - f31125bb85ea
   - 2bba2ff070d9
   - 4b96ced19f75
-  - 1bc5a03faf2e
   - 7abc5f6dd595
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - fed64e676186
-  - d77fdcca400e
-  - 54961e026fe4
   - b3cf4684e9c7
+  - 520e30695ec3
   - d3af38b9c7e1
+  - 54961e026fe4
+  - d77fdcca400e
+  - fed64e676186
   - 52af33194019
-  - 520e30695ec3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -222,8 +222,8 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 2aea122fbd25
   - 79261884facd
+  - 2aea122fbd25
   - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -236,10 +236,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
+  - ef2ad746b589
   - 602de62d995b
-  - 43798b4caee0
   - 8b3e3657034e
-  - ef2ad746b589
+  - 43798b4caee0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -297,19 +297,19 @@ tools:
 - name: maker
   owner: iuc
   revisions:
-  - 370c210d9541
   - d46d803ca6cc
   - 3c1a01127868
+  - 370c210d9541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - 033755194fe9
   - b815ec682418
-  - c8ac28e8ac44
   - e95d52d295d7
+  - c8ac28e8ac44
   - 624606f7c996
+  - 033755194fe9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -352,10 +352,10 @@ tools:
   owner: crs4
   revisions:
   - 8a22554cdde2
-  - eaee459f3d69
-  - bf68eb663bc3
   - a17498c603ec
   - d643e3b03500
+  - bf68eb663bc3
+  - eaee459f3d69
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -367,15 +367,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - ba6d2c32f797
   - 3f987772e283
+  - ba6d2c32f797
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sanntis_marine
@@ -399,24 +399,23 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 8f92c2b26e6d
-  - ca2b512e8d7c
-  - c7275bd8b4d6
-  - 268d162b9c49
-  - 68693743661e
   - cfcf33df7fc0
+  - 268d162b9c49
+  - 5b80f544c67f
   - 6322be79bd8e
+  - 8f92c2b26e6d
   - 5a29ab10dba6
-  - 5b80f544c67f
+  - 68693743661e
+  - c7275bd8b4d6
   - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 2b3e65a4252f
   - 5fab4f81391d
   - 09d6806c609e
+  - 2b3e65a4252f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -441,25 +440,25 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 51dd22484644
   - 45083d070fb8
-  - 37213cf56392
-  - ac8250086ac3
-  - e1a9d6fd258d
-  - d03af1c7002c
   - 8cb134b8c1a5
-  - 037a11682176
+  - 4839e590cb26
+  - ac8250086ac3
   - 809dfc93d593
+  - 51dd22484644
+  - 037a11682176
   - 200c378d85f3
-  - 4839e590cb26
+  - d03af1c7002c
+  - e1a9d6fd258d
   - ba6f87115e13
+  - 37213cf56392
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm