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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2023-07-02 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2023-07-02, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #393](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#393/) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
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| ## Proteomics | ||
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| - diann was updated to [9fa3dbf06f17](https://toolshed.g2.bx.psu.edu/view/galaxyp/diann/9fa3dbf06f17) | ||
| - openms_openpepxl was updated to [40cc19c0dbd6](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6) | ||
| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_openpepxl was updated to [fc36cfd19834](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
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| ## FASTA/FASTQ | ||
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| - fastq_to_fasta was updated to [02a5f43cd5d1](https://toolshed.g2.bx.psu.edu/view/devteam/fastq_to_fasta/02a5f43cd5d1) | ||
| - fastq_to_fasta was updated to [8979c288aefb](https://toolshed.g2.bx.psu.edu/view/devteam/fastq_to_fasta/8979c288aefb) | ||
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| ## Graph/Display Data | ||
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| - geneiobio was updated to [c0af7b196a89](https://toolshed.g2.bx.psu.edu/view/iuc/geneiobio/c0af7b196a89) | ||
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| ## Metagenomic Analysis | ||
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| - dada2_assigntaxonomyaddspecies was updated to [76d3d2b10738](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_assigntaxonomyaddspecies/76d3d2b10738) | ||
| - dada2_dada was updated to [84fd33a60b35](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_dada/84fd33a60b35) | ||
| - dada2_filterandtrim was updated to [34e55239e68b](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_filterandtrim/34e55239e68b) | ||
| - dada2_learnerrors was updated to [0776d824d896](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_learnerrors/0776d824d896) | ||
| - dada2_makesequencetable was updated to [8470de786d47](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_makesequencetable/8470de786d47) | ||
| - dada2_mergepairs was updated to [84743da21318](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_mergepairs/84743da21318) | ||
| - dada2_plotcomplexity was updated to [555ccac8a4c5](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_plotcomplexity/555ccac8a4c5) | ||
| - dada2_plotqualityprofile was updated to [a58e4a43f49c](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_plotqualityprofile/a58e4a43f49c) | ||
| - dada2_removebimeradenovo was updated to [1bc3657cd694](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_removebimeradenovo/1bc3657cd694) | ||
| - dada2_seqcounts was updated to [9058d8943303](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_seqcounts/9058d8943303) | ||
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| ## SAM/BAM | ||
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| - samtools_coverage was updated to [c4ff13d2aab3](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_coverage/c4ff13d2aab3) | ||
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| ## Virology | ||
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| - ivar_consensus was updated to [17f911830a8c](https://toolshed.g2.bx.psu.edu/view/iuc/ivar_consensus/17f911830a8c) | ||
| - ivar_filtervariants was updated to [1ef5b6e3e09d](https://toolshed.g2.bx.psu.edu/view/iuc/ivar_filtervariants/1ef5b6e3e09d) | ||
| - ivar_removereads was updated to [69797fa273c3](https://toolshed.g2.bx.psu.edu/view/iuc/ivar_removereads/69797fa273c3) | ||
| - ivar_trim was updated to [0893a1dbb807](https://toolshed.g2.bx.psu.edu/view/iuc/ivar_trim/0893a1dbb807) | ||
| - ivar_variants was updated to [045d6d00f606](https://toolshed.g2.bx.psu.edu/view/iuc/ivar_variants/045d6d00f606) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
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