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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2023-09-26 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2023-09-26, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #406](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#406/) | ||
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| ## Machine Learning | ||
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| - keras_batch_models was updated to [9d77b259ef27](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_batch_models/9d77b259ef27) | ||
| - keras_model_builder was updated to [f7ecdde4b201](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_model_builder/f7ecdde4b201) | ||
| - keras_model_config was updated to [61a6132df9e0](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_model_config/61a6132df9e0) | ||
| - keras_train_and_eval was updated to [0af678661e20](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_train_and_eval/0af678661e20) | ||
| - ml_visualization_ex was updated to [a536d2736c2d](https://toolshed.g2.bx.psu.edu/view/bgruening/ml_visualization_ex/a536d2736c2d) | ||
| - model_prediction was updated to [980bf31faa05](https://toolshed.g2.bx.psu.edu/view/bgruening/model_prediction/980bf31faa05) | ||
| - sklearn_build_pipeline was updated to [9160cb4069c2](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_build_pipeline/9160cb4069c2) | ||
| - sklearn_clf_metrics was updated to [e9821a426d75](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_clf_metrics/e9821a426d75) | ||
| - sklearn_data_preprocess was updated to [045faa05e712](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_data_preprocess/045faa05e712) | ||
| - sklearn_discriminant_classifier was updated to [fc48ce12454b](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_discriminant_classifier/fc48ce12454b) | ||
| - sklearn_ensemble was updated to [1682df52c084](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_ensemble/1682df52c084) | ||
| - sklearn_estimator_attributes was updated to [5a125d1ac9b9](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_estimator_attributes/5a125d1ac9b9) | ||
| - sklearn_feature_selection was updated to [5276bdb49315](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_feature_selection/5276bdb49315) | ||
| - sklearn_fitted_model_eval was updated to [0926c2b1315f](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_fitted_model_eval/0926c2b1315f) | ||
| - sklearn_generalized_linear was updated to [14f0ccc85505](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_generalized_linear/14f0ccc85505) | ||
| - sklearn_label_encoder was updated to [2be90d2f29a7](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_label_encoder/2be90d2f29a7) | ||
| - sklearn_lightgbm was updated to [3045d322d4ac](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_lightgbm/3045d322d4ac) | ||
| - sklearn_model_validation was updated to [30f892a9b46d](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_model_validation/30f892a9b46d) | ||
| - sklearn_nn_classifier was updated to [4db563e8d453](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_nn_classifier/4db563e8d453) | ||
| - sklearn_numeric_clustering was updated to [aeca97d9a214](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_numeric_clustering/aeca97d9a214) | ||
| - sklearn_pairwise_metrics was updated to [e79200975daf](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_pairwise_metrics/e79200975daf) | ||
| - sklearn_pca was updated to [945a53c248de](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_pca/945a53c248de) | ||
| - sklearn_regression_metrics was updated to [6db5c1dfb076](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_regression_metrics/6db5c1dfb076) | ||
| - sklearn_sample_generator was updated to [ab9977548806](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_sample_generator/ab9977548806) | ||
| - sklearn_searchcv was updated to [d37a7f17e35d](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_searchcv/d37a7f17e35d) | ||
| - sklearn_svm_classifier was updated to [6d23883e0b94](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_svm_classifier/6d23883e0b94) | ||
| - sklearn_to_categorical was updated to [2d53571c2f00](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_to_categorical/2d53571c2f00) | ||
| - sklearn_train_test_eval was updated to [adf9f8d5ab9a](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_train_test_eval/adf9f8d5ab9a) | ||
| - sklearn_train_test_split was updated to [33c564caa3c4](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_train_test_split/33c564caa3c4) | ||
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| ## Statistics | ||
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| - scipy_sparse was updated to [9f9cf31e3111](https://toolshed.g2.bx.psu.edu/view/bgruening/scipy_sparse/9f9cf31e3111) | ||
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| ## Data and Metadata Management | ||
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| - eml2eal was updated to [5c0290c4225a](https://toolshed.g2.bx.psu.edu/view/ecology/eml2eal/5c0290c4225a) | ||
| - makeeml was updated to [9cbac7a9b1a3](https://toolshed.g2.bx.psu.edu/view/ecology/makeeml/9cbac7a9b1a3) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
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| ## Get Data | ||
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| - ncbi_datasets was updated to [75acf92c8fd5](https://toolshed.g2.bx.psu.edu/view/iuc/ncbi_datasets/75acf92c8fd5) | ||
| - sra_tools was updated to [734abc7ac21d](https://toolshed.g2.bx.psu.edu/view/iuc/sra_tools/734abc7ac21d) | ||
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| ## RNA Analysis | ||
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| - edger was updated to [a8305cf0c951](https://toolshed.g2.bx.psu.edu/view/iuc/edger/a8305cf0c951) | ||
| - trinity was updated to [8f1c3df4dd49](https://toolshed.g2.bx.psu.edu/view/iuc/trinity/8f1c3df4dd49) | ||
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| ## Proteomics | ||
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| - calisp was updated to [867f17ede7f3](https://toolshed.g2.bx.psu.edu/view/galaxyp/calisp/867f17ede7f3) | ||
| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
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| ## Assembly | ||
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| - canu was updated to [86f150c8019d](https://toolshed.g2.bx.psu.edu/view/bgruening/canu/86f150c8019d) | ||
| - abyss was updated to [a929ce596a34](https://toolshed.g2.bx.psu.edu/view/iuc/abyss/a929ce596a34) | ||
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| ## Annotation | ||
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| - bakta was updated to [728dacaf08a9](https://toolshed.g2.bx.psu.edu/view/iuc/bakta/728dacaf08a9) | ||
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| ## Convert Formats | ||
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| - biom_convert was updated to [e177a8ea0bf1](https://toolshed.g2.bx.psu.edu/view/iuc/biom_convert/e177a8ea0bf1) | ||
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| ## Metagenomic Analysis | ||
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| - mapseq was updated to [a09139ba9c06](https://toolshed.g2.bx.psu.edu/view/iuc/mapseq/a09139ba9c06) | ||
| - staramr was updated to [3b22de20bd4b](https://toolshed.g2.bx.psu.edu/view/nml/staramr/3b22de20bd4b) | ||
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| ## Nanopore | ||
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| - pycoqc was updated to [dc1500f42073](https://toolshed.g2.bx.psu.edu/view/iuc/pycoqc/dc1500f42073) | ||
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| ## Picard | ||
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| - picard was updated to [f9242e01365a](https://toolshed.g2.bx.psu.edu/view/devteam/picard/f9242e01365a) | ||
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| ## Text Manipulation | ||
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| - filter_tabular was updated to [557ec8d7087d](https://toolshed.g2.bx.psu.edu/view/iuc/filter_tabular/557ec8d7087d) | ||
| - query_tabular was updated to [3a6b78c39dca](https://toolshed.g2.bx.psu.edu/view/iuc/query_tabular/3a6b78c39dca) | ||
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| ## Variant Calling | ||
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| - ucsc_fatovcf was updated to [d9965e143053](https://toolshed.g2.bx.psu.edu/view/iuc/ucsc_fatovcf/d9965e143053) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
| - data_manager_mapseq was updated to [dbf2735e8480](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_mapseq/dbf2735e8480) | ||
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| ## NCBI Blast | ||
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| - blastxml_to_top_descr was updated to [8dc4ba7eba5d](https://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr/8dc4ba7eba5d) | ||
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