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Commits on Mar 27, 2023

• Merge pull request smarco#57 from tshauck/update-readme

  Show description for d4567bc
  smarco

  authored
  d4567bc

• docs: fix doc command

  tshauck

  committed
  769e2ba

Commits on Feb 23, 2023

• Merge pull request smarco#54 from marcelm/static-fix

  Show description for 5bf73fd
  smarco

  authored
  5bf73fd

Commits on Feb 17, 2023

• wfa2cpp_static should link against wfa2_static

  Show description for 37ad27d
  marcelm

  committed
  37ad27d

Commits on Feb 10, 2023

• Merge pull request smarco#48 from marcelm/cmake

  Show description for d111683
  smarco

  authored
  d111683

Commits on Feb 8, 2023

• Do not install anything when used with FetchContent

  Show description for d71685b
  marcelm

  committed
  d71685b

• Add target aliases

  Show description for 621d8fe
  marcelm

  committed
  621d8fe

• Use target_include_directories over include_directories

  Show description for b686019
  marcelm

  committed
  b686019

• Add C++ bindings library as a CMake target

  Show description for 714549e
  marcelm

  committed
  714549e

Commits on Jan 28, 2023

• Merge pull request smarco#45 from pjotrp/main

  Show description for ab690aa
  smarco

  authored
  ab690aa

• CMake: updated install paths and adding missing source code for Debian+vcflib build

  pjotrp

  committed
  188b522

Commits on Jan 27, 2023

• Merge pull request smarco#44 from pjotrp/main

  Show description for cf9ca19
  smarco

  authored
  cf9ca19

• CMake: merge Debian packaging changes - ready to R&R

  pjotrp

  committed
  c753c0a

Commits on Jan 26, 2023

• Merge pull request smarco#43 from pjotrp/main

  Show description for 77a9a14
  smarco

  authored
  77a9a14

Commits on Jan 25, 2023

• Fixes GNU destination paths, hopefully. See comments smarco#42

  pjotrp

  committed
  c8e2be9

• Merge pull request smarco#42 from pjotrp/main

  Show description for 8ef018a
  smarco

  authored
  8ef018a

• CMake: install include files in include/wfa2lib/ subdirectory

  pjotrp

  committed
  7006f99

• CMake: use include(GNUInstallDirs)

  pjotrp

  committed
  ce6fdd7

• CMake: split building static and shared libs, thanks @eli-schwartz, smarco#41

  pjotrp

  committed
  cee2030

• CMake: add test

  pjotrp

  committed
  1daf700

• CMake: tweaking build and adding documentation on building with CMake

  pjotrp

  committed
  b10d427

• CMake: handle WFA_PARALLEL through OPENMP flag and provide EXTRA_FLAGS option

  pjotrp

  committed
  00ce6fe

Commits on Jan 19, 2023

• Merge pull request smarco#41 from pjotrp/main

  Show description for 0a308a4
  smarco

  authored
  0a308a4

• Add CMake support for building and installing shared lib and static lib

  pjotrp

  committed
  e980d65

Commits on Jan 12, 2023

• Merge pull request smarco#38 from pjotrp/main

  Show description for 622e6a0
  smarco

  authored
  622e6a0

• Merge branch 'pjotrp'

  pjotrp

  committed
  0d77c88

Commits on Nov 26, 2022

• Patching WFA2-lib to prevent C macros from bleeding into the environment. See

  Show description for 8f66ddf
  pjotrp

  committed
  8f66ddf

Commits on Sep 5, 2022

• Merge pull request smarco#32 from smarco/fix_multiple_definitions

  Show description for 4600d5d
  smarco

  authored
  4600d5d

• avoid multiple definitions of match_function_params

  AndreaGuarracino

  committed
  facfc23

Commits on Aug 14, 2022

• add setMaxNumThreads and setMinOffsetsPerThread methods to the WFAligner class

  AndreaGuarracino

  committed
  a9eedba

• restore -DWFA_PARALLEL for WFA intra-sequence parallelization

  AndreaGuarracino

  committed
  8327065

Commits on Aug 13, 2022

• fix the PFFLAG assignment when BUILD_WFA_PARALLEL is set

  AndreaGuarracino

  committed
  0e2601f

Commits on Aug 10, 2022

• Merge remote-tracking branch 'origin/development' into main

  smarco

  committed
  b8df649

• Corrected max-score-bound (+1) affecting cases where the sequences are very long and completely different (e.g., C -> AA...AA)

  smarco

  committed
  3b21505

• Merge remote-tracking branch 'origin/development' into main

  smarco

  committed
  ac65bc8

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