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Commits on Aug 10, 2022

• MemFix: // Reset

  smarco

  committed
  a08c498

Commits on Aug 9, 2022

• Merged dev

  smarco

  committed
  71f2891

• Merge remote-tracking branch 'origin/development' into main

  smarco

  committed
  c676d8f

• Propagate max-score/lambda to biWFA-subaligners

  smarco

  committed
  b9a93d8

• Merge remote-tracking branch 'origin/development' into main

  smarco

  committed
  d810ad3

• Added interface (C/C++) to wfmash heuristics and align-benchmark option --wfa-max-score

  smarco

  committed
  e0a647c

Commits on Aug 8, 2022

• added --max-score to align_benchmark

  AndreaGuarracino

  committed
  ff3e5cc

Commits on Aug 2, 2022

• Merge pull request smarco#29 from RagnarGrootKoerkamp/development

  Show description for 3175dfb
  smarco

  authored
  3175dfb

Commits on Aug 1, 2022

• Add subsection to readme

  RagnarGrootKoerkamp

  committed
  16558b8

• Move example code to separate file

  RagnarGrootKoerkamp

  committed
  cb91e12

• Add build.rs sample for rust bindings

  RagnarGrootKoerkamp

  committed
  bf04cea

• Small code updates: refactor, checks, plot

  smarco

  committed
  98b16f7

Commits on Jul 30, 2022

• Improved plotting

  smarco

  committed
  8f0ee5d

Commits on Jul 25, 2022

• Refactored componen-begin/end and align-benchmark

  smarco

  committed
  070b884

• Factor wavefronts -> wavefront

  smarco

  committed
  bc9aee9

• Refactor: CIGAR as a pointer object

  smarco

  committed
  0a2f047

• Added utests

  smarco

  committed
  355d29b

• Added bialigner/unialigner

  smarco

  committed
  4b4d88f

• Refactor bialign->aligners

  smarco

  committed
  d641526

• Refactored to unialign module and debug

  smarco

  committed
  062bd8f

Commits on Jul 24, 2022

• Refactor and added Utests

  Show description for 6e45427
  smarco

  committed
  6e45427

Commits on Jul 20, 2022

• Updated heuristics section on README, added notes, and integrated wfmash heuristic

  smarco

  committed
  06af50c

• X-drop/Z-drop to quick abandon alignment based on SWG-score drops

  smarco

  committed
  2f2b0b6

Commits on Jul 13, 2022

• Fixed bug on internal-score conversion and refactor error-codes

  smarco

  committed
  6189f70

Commits on Jul 11, 2022

• Merge remote-tracking branch 'origin/development' into main

  smarco

  committed
  b34805c

• Fixed bug on BiWFA fallback

  smarco

  committed
  7659ccb

• Merge remote-tracking branch 'origin/development' into main

  smarco

  committed
  1cb9a57

• Fixed small mem leak on BiWFA

  smarco

  committed
  52e8ac1

Commits on Jul 10, 2022

• Merge remote-tracking branch 'origin/development' into main

  smarco

  committed
  337b823

• Fixed bug on biwfa (sometimes it outputed (+/-G_o) score, CIGARS were correct)

  smarco

  committed
  6d43da2

• Implemented BiWFA+Heuristics+CutOffs and patched cases when heuristics make impossible find the alignment (WFA and BiWFA)

  smarco

  committed
  adba5b0

Commits on Jul 8, 2022

• use environment variables for CC and CPP

  AndreaGuarracino

  committed
  5292906

Commits on Jul 7, 2022

• Updated CPP interface to cover M!=0

  smarco

  committed
  b2c0af1

• Supported max-score on BiWFA (bail out of biWFA at a max score)

  smarco

  committed
  4952e90

Commits on Jul 6, 2022

• Merge remote-tracking branch 'origin/development' into main

  smarco

  committed
  d933a10

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