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Commits on Jul 6, 2022

• Updated main Makefile and examples Makefile

  smarco

  committed
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• - Implemented Eizenga's M!=0 formula to allow any match score

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  smarco

  committed
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Commits on Jun 10, 2022

• Added debug info for biwfa

  smarco

  committed
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Commits on Apr 24, 2022

• Merge pull request smarco#15 from Millak/patch-1

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  smarco

  authored
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• Optimized naive BiWFA breakpoint detection

  smarco

  committed
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• Extended BiWFA to other distances (edit, gap-linear, gap-affine2p)

  smarco

  committed
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Commits on Apr 23, 2022

• Updated generate-datasets, align-bench menu, and utests

  smarco

  committed
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Commits on Apr 21, 2022

• Integrated BiWFA-gapAffine as ultralow memory mode (for the moment)

  smarco

  committed
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• Making room for BiWFA (support functions)

  smarco

  committed
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Commits on Apr 19, 2022

• Allow overriding CC CPP variables

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  Millak

  authored
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Commits on Apr 14, 2022

• Merge pull request smarco#14 from pjotrp/main

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  smarco

  authored
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• gitignore: standard C/C++ ignores, as well as ignore transient build/, lib/ and bin/ created by make file

  pjotrp

  committed
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Commits on Apr 4, 2022

• Implemented exact-prunning on edit-distance

  smarco

  committed
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• Optimized backtrace-matches

  smarco

  committed
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• Fixed CPP-bindings ends-free overload (solves smarco#11)

  smarco

  committed
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• Improved Slab module to use less memory and be more lighweight

  smarco

  committed
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Commits on Apr 3, 2022

• Use LTO by default

  smarco

  committed
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Commits on Apr 2, 2022

• Intra-parallel implementation (computeNext & Extend)

  smarco

  committed
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• Clean up scripts folder

  smarco

  committed
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Commits on Mar 21, 2022

• Fixed smarco#1 (wfa adaptive heuristic used with ends-free)

  smarco

  committed
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Commits on Mar 15, 2022

• Fixed issue smarco#1

  smarco

  committed
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Commits on Mar 8, 2022

• README updates

  smarco

  committed
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Commits on Mar 7, 2022

• little README's tweaks

  AndreaGuarracino

  committed
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• Added heuristic section on README

  smarco

  committed
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• make the steps_between_cutoffs parameter optional and equal to 1 by default

  AndreaGuarracino

  committed
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• Removed med low-memory mode (low and ultralow kept -- but renamed)

  smarco

  committed
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• Implemented heuristic additional methods

  smarco

  committed
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Commits on Feb 28, 2022

• Factored examples folder

  smarco

  committed
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Commits on Feb 25, 2022

• Implemented partial-compacts in BT-Buffer

  smarco

  committed
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Commits on Feb 24, 2022

• Updated align-benchmark parallel

  smarco

  committed
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Commits on Feb 23, 2022

• Added BPM to align-benchmark and factorized options

  smarco

  committed
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Commits on Feb 18, 2022

• - Compile examples

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  smarco

  committed
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Commits on Feb 12, 2022

• Factor tools

  smarco

  committed
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• - Refactored

  smarco

  committed
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• Added utest. Fixed small regression.

  smarco

  committed
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