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Hi, I used the latest version of vg. And I noticed that there are 2 parameters -A and -a. The description of them seems similar. I think every and all seems the same? But their might be some different actually. Can you explain? Thank you very much!
vg call -h
-a, --genotype-snarls Genotype every snarl, including reference calls (use to compare multiple samples)
-A, --all-snarls Genotype all snarls, including nested child snarls (like deconstruct -a)
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By the way, I use the gbz file and the .xg file of Minigraph Cactus graph to running vg pack and vg call, and I got 2 vcf files. I check the two vcf files are the same. And I ran with/without attaching snarl file, it doesn't seem to have an effect on the results either.
Hi, I used the latest version of vg. And I noticed that there are 2 parameters
-A
and-a
. The description of them seems similar. I think every and all seems the same? But their might be some different actually. Can you explain? Thank you very much!The text was updated successfully, but these errors were encountered: