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834 Open 1,254 Closed
834 Open 1,254 Closed
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Issues list

How to classify SV from a graph constructed directly from aligned de novo assemblies
#4476 opened Dec 10, 2024 by dudududu12138
vg call issues
#4475 opened Dec 10, 2024 by asylvz
What is the proper cutoff of GQ in the output vcf file ?
#4473 opened Dec 9, 2024 by dudududu12138
I have a question about vg giraffe
#4472 opened Dec 7, 2024 by pioneer-pi
4
How to rename the paths in the surject result(.bam)
#4470 opened Dec 6, 2024 by dudududu12138
What's the difference of the two parameters (-A and -a) in vg call ?
#4469 opened Dec 6, 2024 by dudududu12138
1
Folowing VG-RDF,-the-Ensembl-bacteria-E.-coli-genome-hack-attack
#4467 opened Dec 4, 2024 by buchanri
vg pack error
#4463 opened Dec 2, 2024 by sdws1983
4
perform variant detection on second-generation sequencing data based on the pan-genome constructed using Minigraph-Cactus
#4462 opened Nov 30, 2024 by C-YONG
vg rna can't parse bgzipped GFF3
#4459 opened Nov 27, 2024 by faithokamoto
vg Giraffe
#4456 opened Nov 26, 2024 by pengyan19
1
Detect when Protobuf streams start with other file types' magic numbers
#4449 opened Nov 20, 2024 by adamnovak
Efficient HandleGraph to JSON conversion
#4448 opened Nov 19, 2024 by adamnovak
END and POS do not agree
#4447 opened Nov 18, 2024 by asylvz
vg call strips path/contig info from vcf
#4445 opened Nov 14, 2024 by CormacKinsella
4
Higher vg call AD values after using vg filter
#4443 opened Nov 14, 2024 by danielwood1992
8
Issue with vg call Generating VCF File for HBV Pangenome
#4442 opened Nov 12, 2024 by lihuanhuan20000
1
VG Paths --Metadata Warning: Duplicate Paths Exist in Graph
#4440 opened Nov 8, 2024 by AbdelF6
1
does vg giraffe support the third mapping of precise long reads (PacBio HiFi, ONT) to graph-based pan-genomes?
#4437 opened Nov 6, 2024 by ChenDepp
1
Release vg v1.62.0
#4435 opened Nov 4, 2024 by adamnovak
28 tasks
v1.62.0
VG STATS: 2000 Properly Paired Inquiry
#4434 opened Nov 4, 2024 by AbdelF6
9
Demote Giraffe warnings that users can't fix to notices
#4431 opened Oct 29, 2024 by adamnovak
Extracting specific path IDs for making subset gfa file
#4423 opened Oct 23, 2024 by OZTaekOppa
1
distance index slow to compute snarls
#4420 opened Oct 21, 2024 by glennhickey
@xchang1
3
How to Generate a VCF File Showing Differences Between HG002 Haplotypes from the HPRC Pangenome
#4419 opened Oct 17, 2024 by xuxingyubio
4
ProTip! Updated in the last three days: updated:>2024-12-08.