You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, I used the Minigraph Cactus graph as a reference for analysis. And I ran vg surject to convert my .gam result to .bam. But the path name in Minigraph Cactus is like GRCh38#0#chr1, so the contig names in the surject result bam file are also like this. Is there any parameter to change the contig name? Just leave “chr1” and delete “GRCh38#0#”? Or is it only possible to change it myself with a shell script?
The text was updated successfully, but these errors were encountered:
Hi, I used the Minigraph Cactus graph as a reference for analysis. And I ran
vg surject
to convert my.gam
result to.bam
. But the path name in Minigraph Cactus is likeGRCh38#0#chr1
, so the contig names in the surject result bam file are also like this. Is there any parameter to change the contig name? Just leave “chr1” and delete “GRCh38#0#”? Or is it only possible to change it myself with a shell script?The text was updated successfully, but these errors were encountered: