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20 Open 171 Closed
20 Open 171 Closed
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Issues list

Parameter optimization guidance for cross species integration
#324 opened Nov 8, 2024 by KaczorowskiLab
Error in ImputeKNN
#313 opened Jun 11, 2024 by kangjiajinlong
Error when performing the Wilcoxon test on the peak counts
#312 opened May 20, 2024 by zhangyz1997
1
Query on building shared factor neighborhood graph enhancement New feature or request
#311 opened May 16, 2024 by yuzhong1997
2
Issue with loading old liger object via convertOldLiger function
#307 opened Mar 23, 2024 by ellenbouchard
3
Dataset specificity plot help wanted Extra attention is needed
#298 opened Feb 14, 2024 by yolcasmar
How to improving similarity between snRNA-seq and snATAC-seq nuclei, by tuning parameters like 'k', 'lambda'?
#297 opened Jan 18, 2024 by wangmeijiao
4
Bug in Seurat's wrapper function bug Something isn't working
#292 opened Oct 31, 2023 by soheilj
1
Generate gene and promoter bed files help wanted Extra attention is needed
#289 opened Jul 13, 2023 by ericzzhang01
Another request for help regarding SCTransform question Further information is requested
#282 opened Feb 3, 2023 by cblazier
1
Integrating SCTransform-normalised data with LIGER
#277 opened Nov 1, 2022 by lucygarner
1
plotgeneloadings, runGSEA, plotWordClouds error
#275 opened Oct 19, 2022 by Prathyusha-konda
Integrate multiomics RNA and ATAC data generates trivial all-zero latent values
#265 opened Jul 10, 2022 by elhaam
3
Error in Integrating multiomics RNA and ATAC data after removing one cell-type from RNAseq data
#264 opened Jul 10, 2022 by elhaam
3
Missing value OptimizeALS
#263 opened Jun 6, 2022 by mtegtmey
4
Combining sequencing platforms - 10x and Cel-seq2 - Error in if (trim > 0 && n) { : missing value where TRUE/FALSE needed
#253 opened Jan 25, 2022 by reberya
2
Integration of multiple scATAC samples question Further information is requested
#251 opened Jan 12, 2022 by rLannes
the error with liger question Further information is requested
#224 opened Jun 13, 2021 by honghh2018
12
set.dr.lims default?
#182 opened Jul 22, 2020 by samuel-marsh
analysis of multiple time points * 2 replicates of scRNA-seq question Further information is requested
#138 opened Jan 26, 2020 by tanasa
ProTip! Exclude everything labeled bug with -label:bug.