This is a Docker image for Kneaddata & BMtagger tools. This project is to create a container for Kneaddata and BMtagger and no functionality has been added or removed from original tools during containerization.
Docker image is created via Dockerfile that performs all the necessary
operations and uses kneaddata_bmtagger_env.yml file to add kneaddata
and bmtagger tools in conda environment.
% cat kneaddata_bmtagger_env.yml
name: runtime
channels:
- bioconda
- conda-forge
dependencies:
- kneaddata=0.12.0=pyhdfd78af_1
- bmtagger==3.101
GitHub actions are used to build the container image on tag change and push it to GitHub container registry.
When tagging a new version please use annotated tags in the command line interface.
git clone --branch master [email protected]:wtsi-npg/kneaddata_bmtagger.git kneaddata_bmtagger && cd $_
git tag -a 'x.y.z' -m 'release x.y.z'
git push origin x.y.zReleases are created and published automatically by a GitHub Action on tag creation. Using the web interface to create a release will cause that automation to fail.
Github actions for publishing container image is based on BAMBI.
Avnish Pratap Singh [email protected]