Merge pull request #154 from wtsi-npg/devel

merge devel to master to created release 6.11.0

Changes

@@ -1,6 +1,12 @@
 LIST OF CHANGES
 ---------------
 
+release 6.11.0
+ - iseq_heron_product_metrics table:
+     set index on the id_run column,
+     add pp_name and pp_version columns to capture info
+     about the pipeline, which generated the data
+
 release 6.10.0
  - add id_run column to the iseq_heron_product_metrics table
  - to allow for deletion of iseq_product_metrica rows, drop

lib/WTSI/DNAP/Warehouse/Schema/Result/IseqHeronProductMetric.pm

@@ -89,6 +89,23 @@ Product id, a foreign key into iseq_product_metrics table
 
 Sample name given by the supplier, as recorded by WSI
 
+=head2 pp_name
+
+  data_type: 'varchar'
+  default_value: 'ncov2019-artic-nf'
+  is_nullable: 1
+  size: 40
+
+The name of the pipeline that produced the QC metric
+
+=head2 pp_version
+
+  data_type: 'varchar'
+  is_nullable: 1
+  size: 40
+
+The version of the pipeline specified in the pp_name column
+
 =head2 artic_qc_outcome
 
   data_type: 'char'
@@ -181,6 +198,15 @@ __PACKAGE__->add_columns(
   { data_type => 'char', is_nullable => 0, size => 64 },
   'supplier_sample_name',
   { data_type => 'varchar', is_nullable => 1, size => 255 },
+  'pp_name',
+  {
+    data_type => 'varchar',
+    default_value => 'ncov2019-artic-nf',
+    is_nullable => 1,
+    size => 40,
+  },
+  'pp_version',
+  { data_type => 'varchar', is_nullable => 1, size => 40 },
   'artic_qc_outcome',
   { data_type => 'char', is_nullable => 1, size => 15 },
   'climb_upload',
@@ -230,8 +256,8 @@ __PACKAGE__->set_primary_key('id_iseq_hrpr_metrics_tmp');
 __PACKAGE__->add_unique_constraint('iseq_hrm_digest_unq', ['id_iseq_product']);
 
 
-# Created by DBIx::Class::Schema::Loader v0.07049 @ 2020-07-16 16:20:22
-# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:BCr7sE1ypWdilE/PkyuRQg
+# Created by DBIx::Class::Schema::Loader v0.07049 @ 2020-07-21 15:10:10
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:mS4dZoQbqFVL11aoRMTszQ
 
 our $VERSION = '0';
 

scripts/update_schema_6.11.0.sql

@@ -0,0 +1,9 @@
+ALTER TABLE `iseq_heron_product_metrics` \
+  ADD COLUMN `pp_name` VARCHAR(40) DEFAULT 'ncov2019-artic-nf' \
+    COMMENT 'The name of the pipeline that produced the QC metric' \
+    AFTER `supplier_sample_name`, \
+  ADD COLUMN `pp_version` VARCHAR(40) DEFAULT NULL \
+    COMMENT 'The version of the pipeline specified in the pp_name column' \
+    AFTER `pp_name`, \
+  ADD KEY `iseq_hrm_idrun` (`id_run`), \
+  ADD KEY `iseq_hrm_ppver` (`pp_version`);