Test

Merge pull request #228 from wtsi-npg/devel #800

	name: Test

	on:
	push:
	branches: [master, devel]
	pull_request:
	branches: [master, devel]

	jobs:
	test-packaging:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- uses: actions/setup-python@v5
	with:
	python-version: '3.10'
	architecture: 'x64'

	- name: "Run pip install"
	run: \|
	pip install .


	test:
	runs-on: ubuntu-latest

	services:
	mysql-mlwh:
	image: mysql:8.0
	ports:
	- 3306:3306
	options: >-
	--health-cmd "mysqladmin ping"
	--health-interval 10s
	--health-timeout 5s
	--health-retries 10
	env:
	MYSQL_RANDOM_ROOT_PASSWORD: yes
	MYSQL_TCP_PORT: 3306
	MYSQL_USER: "test"
	MYSQL_PASSWORD: "test"
	MYSQL_DATABASE: "mlwarehouse"
	mysql-qcdb:
	image: mysql:8.0
	ports:
	- 3307:3307
	options: >-
	--health-cmd "mysqladmin ping"
	--health-interval 10s
	--health-timeout 5s
	--health-retries 10
	env:
	MYSQL_RANDOM_ROOT_PASSWORD: yes
	MYSQL_TCP_PORT: 3307
	MYSQL_USER: "test"
	MYSQL_PASSWORD: "test"
	MYSQL_DATABASE: "langqc"

	steps:
	- uses: actions/checkout@v4

	- name: Install Poetry
	run: \|
	pipx install poetry

	- uses: actions/setup-python@v5
	with:
	python-version: '3.10'
	architecture: 'x64'

	- name: Run poetry install
	run: \|
	poetry env use '3.10'
	poetry install

	- name: Run pytest
	run: \|
	poetry run pytest

	test-frontend:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-node@v4
	with:
	node-version: '20'
	- run: npm install
	working-directory: ./frontend
	- run: npm run test
	working-directory: ./frontend

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