Merge pull request #230 from nerdstrike/can_test_data_factory

Remove the now unused test data factory fixture.

tests/fixtures/inbox_data.py

@@ -97,104 +97,3 @@ def inbox_data(mlwhdb_test_session):
     mlwhdb_test_session.commit()
 
     yield True
-
-
-@pytest.fixture()
-def test_data_factory(mlwhdb_test_session, qcdb_test_session):
-    def setup_data(desired_wells):
-        # Setup dicts and "filler" data
-
-        library_qc_type = QcType(
-            qc_type="library", description="Sample/library evaluation"
-        )
-        seq_qc_type = QcType(
-            qc_type="sequencing", description="Sequencing process evaluation"
-        )
-
-        run_name_attr = SubProductAttr(
-            attr_name="run_name", description="PacBio run name."
-        )
-        well_label_attr = SubProductAttr(
-            attr_name="well_label", description="PacBio well label"
-        )
-        seq_platform = SeqPlatform(name="PacBio", description="Pacific Biosciences.")
-        user = User(username="[email protected]")
-        other_user = User(username="[email protected]")
-        states = ["Passed", "Failed", "Claimed", "On hold", "Aborted"]
-        state_dicts = {}
-
-        for state in states:
-            outcome = None
-            if state == "Passed":
-                outcome = True
-            elif state == "Failed":
-                outcome = False
-            state_dicts[state] = QcStateDict(state=state, outcome=outcome)
-
-        qcdb_test_session.add_all(state_dicts.values())
-        qcdb_test_session.add_all(
-            [
-                library_qc_type,
-                seq_qc_type,
-                run_name_attr,
-                well_label_attr,
-                seq_platform,
-                user,
-                other_user,
-            ]
-        )
-
-        # Start adding the PacBioRunWellMetrics and QcState rows.
-        for run_name, wells in desired_wells.items():
-            for well_label, state in wells.items():
-
-                pbe = PacBioEntity(run_name=run_name, well_label=well_label)
-                id = pbe.hash_product_id()
-
-                run_metrics = PacBioRunWellMetrics(
-                    pac_bio_run_name=run_name,
-                    well_label=well_label,
-                    id_pac_bio_product=id,
-                    instrument_type="PacBio",
-                    polymerase_num_reads=1337,
-                    ccs_execution_mode="None",
-                    well_status="Complete",
-                    run_start=datetime.now() - timedelta(days=3),
-                    run_complete=datetime.now() - timedelta(days=1),
-                    well_start=datetime.now() - timedelta(days=2),
-                    well_complete=datetime.now() - timedelta(days=1),
-                )
-                mlwhdb_test_session.add(run_metrics)
-
-                if state is not None:
-
-                    qc_state = QcState(
-                        created_by="me",
-                        is_preliminary=state in ["On hold", "Claimed"],
-                        qc_state_dict=state_dicts[state],
-                        qc_type=seq_qc_type,
-                        seq_product=SeqProduct(
-                            id_product=id,
-                            seq_platform=seq_platform,
-                            sub_products=[
-                                SubProduct(
-                                    sub_product_attr=run_name_attr,
-                                    sub_product_attr_=well_label_attr,
-                                    value_attr_one=run_name,
-                                    value_attr_two=well_label,
-                                    properties_digest=id,
-                                ),
-                            ],
-                        ),
-                        user=user,
-                    )
-                    qcdb_test_session.add(qc_state)
-                    #  Feed back to fixture use
-                    desired_wells[run_name][well_label] = qc_state
-
-        qcdb_test_session.commit()
-        mlwhdb_test_session.commit()
-
-        return desired_wells
-
-    yield setup_data