Code

Release 2.3.0#238

Code

Merged

nerdstrike merged 59 commits intomasterwtsi-npg/npg_langqc:masterfrom develwtsi-npg/npg_langqc:develCopy head branch name to clipboardJul 30, 2024

+1,143-244

Commits

Commits on Mar 13, 2024

• Fix the way vite runs in dev mode so that browser tools work

  nerdstrike

  committed
  05bfcc0

Commits on Jun 4, 2024

• Put in some syntactic sugar checksum types to enable differentiation between use of id_product in mlwh tables

  nerdstrike

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  59c2502

• Undo type fix, it seems to impact how the code works. Disturbing.

  nerdstrike

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  486faca

• Define a response model for pool metrics for a given well

  nerdstrike

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  2b9dc32

• Allow WellWh helper to compute pool metrics

  nerdstrike

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  3b3c32a

• fixture parametrisation not quite right

  nerdstrike

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  b092e19

• An (untested) endpoint for fetching pool stats

  nerdstrike

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  4382aa7

• Make pool fixture self-cleaning

  nerdstrike

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  7f329ff

• Add metrics from mlwh to a multi-sample well, and test pool API endpoint

  Show description for 3c9b9bb
  nerdstrike

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  3c9b9bb

• parameterised fixture triggers unique condition in DB, so make more dynamic

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  nerdstrike

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  7a55cc6

• Stop fixture polluting other tests in module

  Show description for 686481b
  nerdstrike

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  686481b

• Data not needed for defunct mlwh column

  nerdstrike

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  2b6ae77

Commits on Jun 8, 2024

• Added a model for PB library LIMS data.

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  mgcam

  committed
  5c77509

Commits on Jun 11, 2024

• Created an extendable declarative base class

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  mgcam

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  fbff9a7

• Added a model representing libraries in a well.

  mgcam

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  ed54cab

• Update mlwh model to include new barcode4deplexing column

  nerdstrike

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  3df42fa

• Supplement fixture with barcode IDs

  nerdstrike

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  11be2e0

• Added an end point for well library data.

  mgcam

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  00df2ed

Commits on Jun 12, 2024

• Add deplexing barcodes and modes to test data. Check deplexing mode to determine whether to run stats or not.

  nerdstrike

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  6e5472a

• Dropped direct calls to __repr__()

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  mgcam

  committed
  fd3e9ef

• Merge pull request #229 from mgcam/well_libs

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  nerdstrike

  authored
  0b225e7

• Added a check for unlinked data.

  mgcam

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  2f9be8a

Commits on Jun 13, 2024

• Simplified getting linked lims data.

  mgcam

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  372fc56

• Merge pull request #5 from mgcam/render_product_metrics

  Show description for 579138b
  nerdstrike

  authored
  579138b

Commits on Jun 14, 2024

• Merge branch 'devel' into render_product_metrics

  nerdstrike

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  d8b755d

• Merge pull request #224 from nerdstrike/render_product_metrics

  Show description for 6516d9b
  mgcam

  authored
  6516d9b

• Remove the now unused test data factory fixture.

  nerdstrike

  committed
  a467f64

• Moved QCPoolMetrics model generation to the model itself.

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  mgcam

  committed
  221fa08

• Merge pull request #230 from nerdstrike/can_test_data_factory

  Show description for efff421
  mgcam

  authored
  efff421

Commits on Jun 17, 2024

• Merge pull request #231 from mgcam/better_error_propagation

  Show description for 58c53bf
  nerdstrike

  authored
  58c53bf

Commits on Jun 18, 2024

• Fix a testing issue with vue-test-utils and changing .find() behaviour

  nerdstrike

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  ba41cac

• Implement a helper for loading pool metrics

  nerdstrike

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  6c7590e

Commits on Jul 9, 2024

• Scale pool stats to gigabases/round to 2dp for presentation

  nerdstrike

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  d755afd

• App was relying on nested components importing ElToolTip

  nerdstrike

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  389f51f

Commits on Jul 10, 2024

• Make poolstats endpoint not error on absence

  nerdstrike

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  9c52643

• New PoolStats component for the QC View

  nerdstrike

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  22b091c

• Add PoolStats component to QC View and load data on-demand. Fake some HTTP responses in testing

  nerdstrike

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  074b2a4

• Remove unused exception var

  nerdstrike

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  e4fadb8

Commits on Jul 11, 2024

• Merge pull request #232 from nerdstrike/actually_render_product_metrics

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  mgcam

  authored
  ddecaa6

Commits on Jul 12, 2024

• Merge pull request #214 from nerdstrike/fix_dev_mode

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  nerdstrike

  authored
  120db86

Commits on Jul 22, 2024

• Fix stdev function throwing when n=1 for a pool

  nerdstrike

  committed
  72c1367

Commits on Jul 23, 2024

• Give no data when pool size is zero, rather than sparse dict.

  nerdstrike

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  9203da1

• Skip pool stats fetch if sample size is 0. Nothing useful happens

  nerdstrike

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  06eb2da

Commits on Jul 24, 2024

• focusWell fetch errors were not getting their type due to mistake.

  nerdstrike

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  3e4a669

• In some failed runs, hifi_read_bases can be null, which breaks the maths

  nerdstrike

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  ca13391

• Fix a nav bug where searching for runs remove the well detail query, but did not reset the QC View

  nerdstrike

  committed
  0129d69

Commits on Jul 25, 2024

• Pool stats no longer requested during the WellsByRun tests

  nerdstrike

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  c704316

• Error logging added to the browser when the client sees an error in the WellsByRun view.

  nerdstrike

  committed
  a7c025a

• Merge pull request #233 from nerdstrike/actually_render_product_metrics

  Show description for 389483d
  mgcam

  authored
  389483d

Commits on Jul 26, 2024

• Use the correct stdev function, with no Bessel correction

  nerdstrike

  committed
  b8dfae0

• Missed one recalculated coeff of variation

  nerdstrike

  committed
  0e2ac0e

• Merge pull request #234 from nerdstrike/coeff_variation_fix

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  nerdstrike

  authored
  56f4a25

• Lift colours to app-level CSS so we can reuse in more tables.

  nerdstrike

  committed
  04ce801

• Merge pull request #235 from nerdstrike/pool_stats_visuals

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  mgcam

  authored
  b70126f

Commits on Jul 30, 2024

• Add sample name to the pool stats table.

  nerdstrike

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  21ee7b8

• Rationalise pac_bio_run use in QCPoolMetrics

  nerdstrike

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  bd25d0d

• Merge pull request #236 from nerdstrike/sample_in_poolstats

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  mgcam

  authored
  3315994

• Preparing for release 2.3.0

  nerdstrike

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  e305e76

• Merge pull request #237 from nerdstrike/devel

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  nerdstrike

  authored
  72312f2