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allow specification of input processing for stage2 [re]analysis
new subsample methods, allow selection of subsample methods (for QC)
add FASTQ input option to non-consented human split analysis
vtfp : extend template preprocessing to subgraph_io sections (in subgraphs)
container : i) add static parameter files for container-based stage2 reanalyses; ii) downgrade bwa version to 0.17.7 (from 0.7.18) to match current production version