Flip order pre/post -> post/pre in WormNeuroReader

c302/ConnectomeReader.py

@@ -170,11 +170,21 @@ def analyse_connections(cells, neuron_conns, neurons2muscles, muscles, muscle_co
     #core_set = ['VA6', 'VD6']
     print_("\n\nConnections between cells in the subset %s:\n"%(core_set))
 
-
     for c in neuron_conns:
         if c.pre_cell in core_set and c.post_cell in core_set:
             print_(str(c))
 
+    print_details_on =['AVBR','NSMR']
+    for cd in print_details_on:
+        print_("\n\nAll outgoing connections of %s:\n"%(cd))
+        for c in neuron_conns:
+            if c.pre_cell == cd:
+                print_(str(c))
+        print_("\n\nAll incoming connections of %s:\n"%(cd))
+        for c in neuron_conns:
+            if c.post_cell == cd:
+                print_(str(c))
+
 
     print_("")
 

c302/WormNeuroAtlasReader.py

@@ -76,7 +76,7 @@ def read_data(self, include_nonconnected_cells=False):
 
                 connection = False
 
-                gji = gj[apre, apost]
+                gji = gj[apost, apre]
                 num = gji[0]
                 if num>0:
                     #print("Gap junc (%s (%i) -> %s (%i): %s"%(pre, apre, post, apost, gji))
@@ -85,7 +85,7 @@ def read_data(self, include_nonconnected_cells=False):
                     conns.append(ConnectionInfo(pre, post, num, syntype, synclass))
                     connection = True
 
-                csi = cs[apre, apost]
+                csi = cs[apost, apre]
                 num = csi[0]
                 if num>0:
                     #print("Chem syn (%s (%i) -> %s (%i): %s"%(pre, apre, post, apost, gji))

examples/test/test_nwa.py → examples/test/test_WNA.py

@@ -20,6 +20,7 @@
         print("    %s:\t%s"%(e,metadata[m][e]))
 
 test_cells = ['ADAL','ADEL','RIAL', 'VA3', 'VD3'] 
+test_cells = ['NSMR'] 
 for c in test_cells:
     atlas.everything_about(c)