Merge branch 'dev'

README.md

@@ -1,9 +1,27 @@
 # seqdb-api
 
-Sequence management services managing laboratory workflows leading to DNA sequences.
+
+##  Description (en)
+
+Molecular Analysis services - Supported Workflows
+ * Sanger
+ * NGS - Whole Genome
+ * Metagenomics
+ * Generic workflow
 
 seqdb-api is an implementation of the Sequence Module for the [DINA project](https://www.dina-project.net/).
 
+## Description (fr)
+
+Services d'analyse moléculaire - Flux de travail supportés
+
+* Sanger
+* NGS - Génome entier
+* Métagénomique
+* Flux de travail générique
+
+seqdb-api est une implémentation du module de sequence pour le [DINA project](https://www.dina-project.net/) (anglais seulement).
+
 ## Required
 
 * Java 21

pom.xml

@@ -3,7 +3,7 @@
 
   <groupId>ca.gc.aafc</groupId>
   <artifactId>seqdb.api</artifactId>
-  <version>2.18.0</version>
+  <version>2.19.0</version>
   <packaging>jar</packaging>
 
   <name>seqdb-api</name>

src/main/java/ca/gc/aafc/seqdb/api/dto/MolecularAnalysisRunItemDto.java

@@ -31,6 +31,8 @@ public class MolecularAnalysisRunItemDto {
 
   private String usageType;
 
+  private String name;
+
   @JsonApiRelation
   private MolecularAnalysisRunDto run;
 

src/main/java/ca/gc/aafc/seqdb/api/entities/MolecularAnalysisRunItem.java

@@ -57,6 +57,9 @@ public class MolecularAnalysisRunItem implements DinaEntity {
   @Column(name = "usage_type")
   private String usageType;
 
+  @Size(max = 50)
+  private String name;
+
   // eager since we need it for group-based permission
   @ManyToOne(fetch = FetchType.EAGER)
   @JoinColumn(name = "molecular_analysis_run_id")

src/main/resources/db/changelog/db.changelog-master.xml

@@ -62,4 +62,5 @@
   <include file="db/changelog/migrations/55-Add_managed_attribute.xml"/>
   <include file="db/changelog/migrations/56-Add_managed_attribute_to_molecular_analysis.xml"/>
   <include file="db/changelog/migrations/57-Add_quality_control_table.xml"/>
+  <include file="db/changelog/migrations/58-Add_name_to_MolecularAnalysisRunItem.xml"/>
 </databaseChangeLog>

src/main/resources/db/changelog/migrations/58-Add_name_to_MolecularAnalysisRunItem.xml

@@ -0,0 +1,14 @@
+<?xml version="1.1" encoding="UTF-8" standalone="no"?>
+<databaseChangeLog
+    xmlns="http://www.liquibase.org/xml/ns/dbchangelog"
+    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+    xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog https://local.xsd/dbchangelog-4.4.xsd"
+    objectQuotingStrategy="QUOTE_ONLY_RESERVED_WORDS">
+
+    <changeSet id="58-Add_name_to_MolecularAnalysisRunItem" context="schema-change"
+        author="phanm">
+        <addColumn tableName="molecular_analysis_run_item">
+            <column name="name" type="VARCHAR(50)"/>
+        </addColumn>
+    </changeSet>
+</databaseChangeLog>

src/test/java/ca/gc/aafc/seqdb/api/testsupport/factories/MolecularAnalysisRunItemFactory.java

@@ -14,6 +14,7 @@ public static MolecularAnalysisRunItem.MolecularAnalysisRunItemBuilder newMolecu
       .uuid(UUID.randomUUID())
       .createdBy("test user")
       .usageType(SeqReactionDto.TYPENAME)
+      .name("test-name")
       .run(run);
   }
 }

src/test/java/ca/gc/aafc/seqdb/api/testsupport/fixtures/MolecularAnalysisRunItemTestFixture.java

@@ -9,6 +9,7 @@ public static MolecularAnalysisRunItemDto newMolecularAnalysisRunItem() {
     return MolecularAnalysisRunItemDto.builder()
       .createdBy("test-user")
       .usageType(SeqReactionDto.TYPENAME)
+      .name("test-name")
       .build();
   }
 }