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PeleLMeX 23.11

30 Oct 20:18
@esclapez esclapez
v23.11
24d2245
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Full Changelog: v23.05...v23.11

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cgilet, esclapez, and 8 other contributors
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PeleLMeX 23.05

01 May 20:35
@esclapez esclapez
v23.05
e5864ff
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PeleLMeX 23.05

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Full Changelog: v23.03...v23.05

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esclapez and ldowen
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PeleLMeX 23.03

01 Mar 19:43
@esclapez esclapez
v23.03
3fd1187
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PeleLMeX 23.03

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Full Changelog: v23.02...v23.03

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esclapez and baperry2
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PeleLMeX 23.02

01 Feb 18:33
@esclapez esclapez
v23.02
d73709d
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PeleLMeX 23.02

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esclapez, baperry2, and ThomasHowarth
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PeleLMeX 23.01

04 Jan 00:14
@esclapez esclapez
v23.01
457a6e4
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PeleLMeX 23.01

What's Changed

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Full Changelog: v22.12...v23.01

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WeiqunZhang and esclapez
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PeleLMeX 22.12

03 Dec 00:11
@esclapez esclapez
v22.12
0538c23
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PeleLMeX 22.12

What's Changed

  • Update PeleMP submodule, update spray setup to reflect changes in PeleMP by @ldowen in #124
  • Update submodules, removed wall temp as a spray input by @ldowen in #127
  • Add soot restart from plt by @ldowen in #128
  • Control chemistry BoxArray - remove some avgDown by @esclapez in #125
  • Fix floating point error by @esclapez in #130
  • A few fixes on Efield by @esclapez in #129
  • Update submodules and code to use C++17 by @ldowen in #134
  • Update submodules by @ldowen in #135
  • Change wall BCs from reflect_even/odd to extrap/ext_dir. by @cgilet in #137
  • Add an option to use pc_interp when adding brand new level by @esclapez in #139
  • Fix the incompressible option. by @esclapez in #138
  • Update spray test to use uniform spray initialize function, time was … by @ldowen in #141
  • Update for SINTEF channel by @esclapez in #142
  • Add control on Godunov PPM limiter: VanLeer (Default), NoLimiter, WENOZ by @esclapez in #140
  • Update AMReX-Hydro and amrex submods. by @esclapez in #143
  • Move to ubuntu-latest to update default gnu version. by @esclapez in #144
  • Add wall clock time stopping criterion by @baperry2 in #147
  • First crack at a landing page for PeleLMeX by @esclapez in #145
  • Some documentation on EB and Poiseuille V&V by @esclapez in #146

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Full Changelog: v22.09...v22.12

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cgilet, esclapez, and 2 other contributors
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PeleLMeX 22.09

06 Sep 17:38
@esclapez esclapez
v22.09
ac054c9
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PeleLMeX 22.09

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Full Changelog: v22.08...v22.09

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esclapez, ldowen, and bssoriano
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PeleLMeX 22.08

01 Aug 23:02
@esclapez esclapez
v22.08
bdb1599
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PeleLMeX 22.08

What's Changed

Full Changelog: v22.07...v22.08

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esclapez and ldowen
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PeleLMeX 22.07

01 Jul 18:34
@esclapez esclapez
v22.07
cc8bfea
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PeleLMeX 22.07

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Full Changelog: v21.10...v22.07

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nickwimer, esclapez, and ldowen
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November 2021

04 Nov 19:09
@esclapez esclapez
v21.11
f247355
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November 2021 
21.11 Release merge (#29)

* Move the CoveredMask reset flag out of the if statement.

* Add user-defined chemistry tolerances.

* Add a Triple flame in Exec/Cases/TripleFlame

* While making new level from coarse, get 1 ghost cell right so that
AmrNewTime data have one ghost cell properly set.

* Add a simple 2D CH4/Air premixed bunsen case. Tested up to 5 levels.

* Add a 3Dversion of the premixed bunsen flame.

* Need to reset the covered cell mask after restart in case regrid is not called right after.

* Add option to restart an efield simulation from a non-efield one.

* When restarting from non-efield chk, initialize electro-neutral nE
field.

* Fix PlotFile to plot I_R(nE) with efield and write/read in phiV/nE in
chk.

* Machinery to restart from non-efield chk.

* Update Precond operator to implement the second approximation of Stilda.

* Make use of the absolute tolerance in MLGMRES.

* Add fillpatch functions for the non-linear state components.

* Enable Schur complement approximation 2.

* Define and ParmParse m_ef_schur_approx.

* Floor nE along with species if required.

* Fix typos in PeleLMBC.cpp

* Update PeleLMeX header for new fillpatch functions.

* Replace mechanism.h by mechanism.H

* Setup gravity.

* Use gravity in velocity forces.

* Replace .copy by .ParallelCopy.

* Add a lifting hot bubble case in RegTests.

* Default the pprocConvOrder.py to CoVo inputs.

* Enable CoVo in all directions.

* Default input.2d_CoVo to diagonal direction.

* Update pprocConvOrder.py with version checking the convergence order.

* Init convergence testing CI.

* Fix convergence CI (#6)

* Fix deps in convergence CI.

* Update pprocConvOrder.py.

* Fix Pele Physics (#7)

* Update make system to catch up with PP.

* Update sources for latest PP.

* Fix parsing of constant transport parameters.

* Switch AMReX-Hydro (#8)

* Add AMReX-Hydro to deps and GMake.

* Remove LMX Godunov folder from listed sources.

* Fix AMReX-Hydro makefile again and need MOL.

* Swtich to HydroUtils to predict velocity and use
create_umac_grown_constrained.

* Remove stranded Godunov include.

* Add m_advection_type. Only Godunov in LMeX.

* Switch to HydroUtils::ComputeFluxesOnBoxFromState for advection fluxes.

* Remove Godunov from LMeX sources.

* Rewritte the advective flux divergence to comply with AMReX-Hydro way.

* Update CI.

* Feature balance (#9)

* Add kin. energy derive function.

* Add kin.energy derive and ParmParse temporals input.

* Start setting-up run-time diagnostics.

* Update MLNorm0 to not account for fine-covered cells.

* Setup mass balance in runtime diagnostics.

* Add temporal keys to FlameSheet regtests

* Git ignore

* Add gnuplot script for mass balance.

* Fix runtime selection of reactor. (#10)

* Missing AMReX-Hydro home in convergence testing.

* Update Make.PeleLMeX

* Update reactor in Sources.

* Remove one call too many to deallocate of transport.

* Update FlameSheet GMake

* Add CVODE input keys.

* Udpate GMake in Periodic and HotBubble

* Fix typo on ReactorNull default:

* Make LMeX GPU-compatible (#11)

* Remove device from lineaChmeForcing.

* Can't init capture in host_device functions.

* Fix call to host function on device lambdas.

* Change OMP.

* Should be the same, but make sure.

* Don't init transport for incompressible flows.

* Missing Gpu Managed. Will be updated later.

* Minor clean up in PeriodicCases.

* Fix parm in FLameSheet too.

* Restore FlameSheet 3D.

* Remove unused.

* Add Sundials memory helper.

* Remove auto-TPL. Recompile all the source each time. Need fix.

* Restore make TPL in GH workflow for now.

* Fix velocity ghost cells for Nodal projection. Function (#12)

should only overwrite Inflow BCs.

* Implement closed chamber algorithm. (#13)

* Add auto-detection of closed chamber and unable overwrite.
Add PPquery of linear solves tolerances.

* Add GammmaInv kernel.

* Move MFSum in Utils and initialize uncovered volume computation.

* MAC projection function handles closed chamber corrections.

* Nodal projection functions handle -/+ of Sbar in RHS.

* Remove TODO comment.

* Pass dp0dt in diffusion forcing.

* Pass dp0dt in Advection forcing.

* Add pOld <-> pNew in advance function.

* Add adjustPandDivU in Eos file.

* Add accessor to divU levels vector

* Add declarations.

* Add ambient pressure to checkpoint file header.

* Uses pNew to get dPdt.

* Fix BL_PROF in UMAC

* Add an enclosed flame test to test closed chamber.

* Add a CI testing closed chamber.

* Enable EB in LMeX (#16)

* Add missing EB sources to Make.

* Add volFrac to plotfile.

* Add PeleLM EB source file.

* Add a static_cast accessor to ebfactory.

* Update AMReX-Hydro calls to pass ebfactory in.

* Missing include for volfrac tagging.

* Update diffusion operator for EB.

* EB compiles and initialize properly.

* Make sure divTau has right Factory.

* Fix getDiffusivity to not set covered face to 0,0 but huge val.

* _OPENMP -> AMREX_USE_OMP

* Remove plot/abort after init.

* First pass at updating DiffusionOp for EB. Mostly done.

* Fix divergence of advective flux function for EB.

* Minor tweak in PeleLMDiffusion. FluxRedist still need to be implemented.

* Re-organive advection to get divergnce and then redistribute when EB.
fillBoundary in between req. a temporary.

* redistribute_AofS function.

* Add redist schemes for adv/diff, ensure enough ghost cells and declarations.

* Add ParmParse to control nodal solve MG depth.

* Enforce EB-covered to 0 for nodal projection.

* Add fluxdivegenceRD to handle diffusive flux redistribution. Fix MFSum
to exclude EB-covered regions.

* Diffusive flux redistribution function.

* Tedious switch between div/divRD for diffusiob fluxes. Might want to simplify later.

* Accessor to RhoH tower.

* Declarations.

* Add 3D case for EnclosedFlame and a thermo-diffusive CH4/H2 PMF.

* Number of ghost cells in EBFactory should be 6 because of StateRedist

* EBFlag test inst. reaction rate.

* Set covered to 0.0 in plotfiles.

* EBFlag in getHGivenT in enthalpy flux.

* Do initial redisitribution and get a covered state.

* Add initial redistribution machinery and first version of covered state. Need to improve !

* Less confusing message since we now have EB.

* StateRedist -> NewStateRedist default and EB-covered declaration.

* Add EB_FlowPastCylinder case, 2D/3D.

* Set EB-covered chi_incr to zero.

* Add FlowPastCylinder CI.

* A series of minor tweaks: (#17)

- git hash subrepo to screen
 - TPROF region cleaned. Add /level chem VARS
 - print to screen nCells/extend of each level during regridding

* Add typical value machinery (#18)

* Setup multi-level min/max excluding for EB/fine covered cells
and use that for typical values.

* Add typical values to chk.

* Reset typval at the beginning of advance when needed.

* ParmParse typval options.

* Typical value declarations & call during the initialization.

* Enable Hypre interface to Nodal/MAC linear solves (#19)

* Add Hypre interface ParmParse hook.

* Pass the right hypre_namespace to MacProj.

* MG depth for MAC solve.

* Pass hypre_namespace to nodal solve.

* Add examples of Nodal/MAC hypre options for FlowPastCylinder case.

* update README

* Add a few EB test cases (#20)

* Add an enclosed vortex, failing linear solves.

* Add an input file using Hypre for the Nodal solver

* Add an EB_EnclosedFlame case too.

* Add an Hypre input for the EB_EnclosedFlame case.

* Fix TypVal bug.

* Add the UserDefined hook to EB geom.

* Add Challenge problem. Something's up, not generating the EB geom
properly at this point.

* Error BC array sizes.

* Add commented out debug statement.

* Remove DEBUG and USE_HYPRE default.

* Restore complete PistonBowl geom.

* A bit more velocity.

* Update sample input file for GMG/Hypre nodal solves.

* EB mask operations (#21)

* Fix EB-covered test while building advective update.

* Check eb-covered while assembling divu

* Set covered diffusion term.

* Check EB-covered on advective face state reconstruction.
Set covered adv. fluxes/term.

* Add 3d input version of the enclosed vortex.

* Forgotten ANREX_USE_EB ifdef.

* Remove LMeX chem tol, now directly handled by the reactor.
Add flag to skip instantaneous RR when using ReactorNull.

* Reactor ini outside OMP region, turn ON skipInstantRR flag.

* Small rearrange of TPROF region for instantRR.

* Skip instantRR if triggered. Update the logic in divU calculation.

* Add a gaseous methane laminar counterflow diffusion flame. (#23)

* Update efield portions of the Sources/Exec (#24)

* Change compiler variable for Efield.

* Bring ABecCec operator up to date with some changes in GPU handling.

* Update Efield cases GNUMakefile

* Update input to FlameSheetIons

* Update Efield compiler check through the sources.

* Modify pltfile to include HRR and re-arrange a bit to not include I_R (#25)

in ReactorNull, drop rhoYs from pltfile by default for ligher plt.

* Update includes of Projector source location and names. (#26)

* Update includes of Projector source location and names.

* Update set typical values too.

* Update to catch up with new PelePhysics PMF (#27)

* Change PMF sources location.

* Update init and bc calls to updated PMF.

* Update the Cases files.

* Update PremBunsen3D input file.

* Update PeriodicCases

* Update EnclosedFlame

* Update EB_FlowPastCylinder

* Update FlameSheet

* Update HotBubble

* Update EB_EnclosedFlame

* Projector now moved to Hydro namespace

* Update input of EnclosedFlame

* update GNUmakefiles for templated PelePhysics (#28)

Co-authored-by: Bruce Perry <[email protected]>

* Temporary test another branch of PP.

* Restore using PP development brqnch in CI.

Co-authored-by: Bruce Perry <[email protected]>
Co-authored-by: Bruce Perry <[email protected]>

Co-authored-by: nickwimer <[email protected]>
Co-authored-by: Bruce Perry <[email protected]>
Co-authored-by: Bruce Perry <[email protected]>
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