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Releases: EBI-Metagenomics/mgnify-pipelines-toolkit

v0.1.9 release

10 Jan 16:03
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What's Changed

  • Add new script to produce table with Rhea IDs and CHEBI reactions from DIAMOND output by @ochkalova in #20
  • Merging Sonya's Rhea script by @mberacochea in #25
  • New script: study_summary_generator + Pydantic/Pandera models/schemas + Click by @chrisAta in #27

New Contributors

Full Changelog: v0.1.8...v0.1.9

v0.1.8

23 Oct 15:22
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Fixed ASV discrepancy bug

v0.1.7

08 Oct 09:16
5b559ea
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Fixing some bugs in get_subunits and primer_val_classification

v0.1.6

02 Sep 14:02
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New features, all coming from #19

  • antismash_gff_builder unit test
  • get_mpt_version script for getting current version of the toolkit
  • remove exit codes from suffix_header_checks - this would cause it to fail in a Nextflow context

v.0.1.5

16 Aug 12:09
d3ca994
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v0.1.4

12 Jul 14:44
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Changes to make_asv_count_tables.py to generate ASV read count files

v0.1.3

24 May 14:05
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This release contains the final changes to the toolkit to support the initial release of the V6 Amplicon pipeline (PR here: EBI-Metagenomics/amplicon-pipeline#7).

v0.1.2

26 Apr 11:43
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Added support for MAPseq assignments of ASVs

v0.1.1

22 Feb 09:03
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Made optimisations for fetch_mcp, reorganised constants, fixed read_count function + more unit tests

v0.1.0

19 Feb 21:17
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Add standard_primer_matching alias I had forgotten