fix #457 remove attribute in gene_id and transcript_id to keep only the first … #731
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| # This is a basic workflow to help you get started with Actions | |
| name: CI | |
| # Controls when the action will run. | |
| # Triggers the workflow on push or pull request events | |
| on: [push, pull_request, workflow_dispatch] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # avoid to run twice push and PR | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| #container: | |
| # image: perl:5.30 | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - name: Install libdb-dev | |
| run: sudo apt-get -y install libdb-dev | |
| - name: Install R | |
| run: sudo apt-get -y install r-base | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| #- name: Checkout AGAT | |
| - uses: actions/checkout@v2 | |
| - name: Setup Perl | |
| uses: shogo82148/actions-setup-perl@v1 | |
| with: | |
| perl-version: '5.30' | |
| install-modules-with: cpanm | |
| install-modules-args: --notest --force | |
| install-modules: File::ShareDir::Install Devel::Cover::Report::Coveralls | |
| - uses: webiny/[email protected] | |
| id: post-run-command | |
| if: ${{ failure() }} | |
| with: | |
| run: cat /home/runner/.cpanm/build.log | |
| - name: install AGAT deps | |
| run: cpanm --installdeps --notest --force . | |
| - name: test | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DEVEL_COVER_OPTIONS: "+ignore,^local/" | |
| run: cover -test -report Coveralls |