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ROBOT as Commandline Tool
ROBOT is an open-source, java-based library and command-line tool for automating ontology development tasks running on macOS, Linux, and Windows.
For further reference see:
R.C. Jackson, J.P. Balhoff, E. Douglass, N.L. Harris, C.J. Mungall, and J.A. Overton.
ROBOT: A tool for automating ontology workflows. BMC Bioinformatics, vol. 20, July 2019.
When referenced in this wiki, the 🤖 emoji might be used.
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Java by Oracle has to be installed in order to use ROBOT.
Make sure it is installed or install via Oracle installation guide. -
Follow the ROBOT installation guide
Links to the different usage scenarios are linked here:
You already know what to do? Perfect, make sure that you miss no step by using checklists
Symbols used in this wiki:
🐙➔ github | 🔶➔ git | 📙➔ protégé | 📝➔ text editor | 🤖➔ robot
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Home
- Welcome! How to participate
- Use Cases
- Best Practice Principles
- Structure of the OEO
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Tutorials: How to...
- ...Get Involved (First Steps)
- ...Contribute
- ...Use Protégé to Change the Ontology
- ...Test the Ontology
- ...Write Competency Questions
- ...Choose a Class Type
- ...Deal with Ambiguous Terms
- ...Use Term Tracker Annotations
- ...Use the GitHub Labels
- ...Set up OwlViz for Visualisation
- ...Use Automation of Recurring Text Entries
- ...Manually Merge Terms from Other Ontologies 🤖
- ...Release a New Ontology Version
- ...Translate Into Turtle RDF
- Setup your Work Environment and Get Involved
- ...Maintain automated Workflows for GitHub Issues and PRs
- Get to Know the Workflow This sections will contain the full workflow in the future
- Tools and Utilities
- Community