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Draft: BowtieBuilder status #150

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Draft: BowtieBuilder status #150

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ctrlaltaf
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Things to do:

  • Work on generate_inputs, run, and parse_output methods in btb.py
  • Create tests for btb

@ctrlaltaf
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Currently goes through all the snakemake process without any errors. Still need to write up pytest functions.

@annaritz
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annaritz commented Jun 18, 2024 •
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TODOs to get this up to speed:

  • transfer BTB github repo to Reed-Compbio? Ask @ellango2612.
  • push docker image to reedcompbio DockerHub
  • make changes about adding directionality to input/output files
  • finish testing for case when files are missing

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@ctrlaltaf @annaritz @gabeah