Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

v1.9.0 #79

Merged
merged 39 commits into from
Mar 14, 2024
Merged

v1.9.0 #79

merged 39 commits into from
Mar 14, 2024

Commits on Oct 3, 2023

  1. Merge pull request #68 from UMCUGenetics/release/v1.8.0 

    Release/v1.8.0
    @rernst
    rernst authored Oct 3, 2023
    Configuration menu
    Copy the full SHA
    c5bed7b View commit details
    Browse the repository at this point in the history

Commits on Oct 16, 2023

  1. Merge pull request #70 from UMCUGenetics/hotfix/v1.8.1 

    Hotfix/v1.8.1
    @rernst
    rernst authored Oct 16, 2023
    Configuration menu
    Copy the full SHA
    503d171 View commit details
    Browse the repository at this point in the history

Commits on Oct 25, 2023

  1. Merge pull request #72 from UMCUGenetics/hotfix/v1.8.2 

    Hotfix/v1.8.2 to develop
    @ellendejong
    ellendejong authored Oct 25, 2023
    Configuration menu
    Copy the full SHA
    ace575e View commit details
    Browse the repository at this point in the history

Commits on Oct 27, 2023

  1. Merge pull request #74 from UMCUGenetics/hotfix/v1.8.3 

    Hotfix/v1.8.3 to develop
    @rernst
    rernst authored Oct 27, 2023
    Configuration menu
    Copy the full SHA
    24cd76a View commit details
    Browse the repository at this point in the history

Commits on Jan 8, 2024

  1. Merge pull request #76 from UMCUGenetics/hotfix/v1.8.4 

    Hotfix/v1.8.4 to develop
    @rernst
    rernst authored Jan 8, 2024
    Configuration menu
    Copy the full SHA
    ee4b19e View commit details
    Browse the repository at this point in the history

Commits on Jan 18, 2024

  1. WIP, new samplesheet writer.

    @rernst
    rernst committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    c217533 View commit details
    Browse the repository at this point in the history

Commits on Jan 19, 2024

  1. Add orientation fixes

    @rernst
    rernst committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    824434f View commit details
    Browse the repository at this point in the history

  2. Add orientation fixes

    @rernst
    rernst committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    18d322c View commit details
    Browse the repository at this point in the history

  3. Remove old update samplesheet code

    @rernst
    rernst committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    e816fc2 View commit details
    Browse the repository at this point in the history

  4. Update sequencing workflow

    @rernst
    rernst committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    eeb11c4 View commit details
    Browse the repository at this point in the history

Commits on Jan 22, 2024

  1. Add illumina tests

    @rernst
    rernst committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    890feda View commit details
    Browse the repository at this point in the history

  2. Move to get_sample_sequence_index to utils and test

    @rernst
    rernst committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    2b45a43 View commit details
    Browse the repository at this point in the history

  3. Enable unit test @ master

    @rernst
    rernst committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    0d33a9a View commit details
    Browse the repository at this point in the history

Commits on Jan 25, 2024

  1. Fix for single index samples

    @rernst
    rernst committed Jan 25, 2024
    Configuration menu
    Copy the full SHA
    20e8018 View commit details
    Browse the repository at this point in the history

Commits on Feb 2, 2024

  1. Add some extra fields

    @rernst
    rernst committed Feb 2, 2024
    Configuration menu
    Copy the full SHA
    1dc667d View commit details
    Browse the repository at this point in the history

  2. Add 0 Mismatches setting for barcodes

    @rernst
    rernst committed Feb 2, 2024
    Configuration menu
    Copy the full SHA
    163d21e View commit details
    Browse the repository at this point in the history

Commits on Feb 12, 2024

  1. Code review changes

    @rernst
    rernst committed Feb 12, 2024
    Configuration menu
    Copy the full SHA
    67f35c6 View commit details
    Browse the repository at this point in the history

  2. Layout

    @rernst
    rernst committed Feb 12, 2024
    Configuration menu
    Copy the full SHA
    02fe411 View commit details
    Browse the repository at this point in the history

Commits on Feb 13, 2024

  1. Add indications_exome_equivalent

    @rernst
    rernst committed Feb 13, 2024
    Configuration menu
    Copy the full SHA
    0c5ee77 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #78 from UMCUGenetics/feature/deep_seq_import 

    Support for deep sequencing imports
    @rernst
    rernst authored Feb 13, 2024
    Configuration menu
    Copy the full SHA
    a1d0f38 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'develop' into feature/illumina_samplesheet_v2

    @rernst
    rernst committed Feb 13, 2024
    Configuration menu
    Copy the full SHA
    8715904 View commit details
    Browse the repository at this point in the history

Commits on Feb 15, 2024

  1. Change volume

    @rernst
    rernst committed Feb 15, 2024
    Configuration menu
    Copy the full SHA
    94848db View commit details
    Browse the repository at this point in the history

  2. Add extra required conversion settings

    @rernst
    rernst committed Feb 15, 2024
    Configuration menu
    Copy the full SHA
    6ccd9cd View commit details
    Browse the repository at this point in the history

Commits on Feb 20, 2024

  1. Tweaks based on lab input

    @rernst
    rernst committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    4bf19f0 View commit details
    Browse the repository at this point in the history

Commits on Feb 21, 2024

  1. python3

    @rernst
    rernst committed Feb 21, 2024
    Configuration menu
    Copy the full SHA
    9431630 View commit details
    Browse the repository at this point in the history

  2. python3

    @rernst
    rernst committed Feb 21, 2024
    Configuration menu
    Copy the full SHA
    f40ed38 View commit details
    Browse the repository at this point in the history

Commits on Feb 23, 2024

  1. Remove debug prints

    @rernst
    rernst committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    9192ec4 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #77 from UMCUGenetics/feature/illumina_samplesheet_v2 

    Feature/illumina samplesheet v2
    @rernst
    rernst authored Feb 23, 2024
    Configuration menu
    Copy the full SHA
    97a16df View commit details
    Browse the repository at this point in the history

  3. Merge branch 'develop' into release/v1.9.0

    @rernst
    rernst committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    42961c5 View commit details
    Browse the repository at this point in the history

Commits on Feb 29, 2024

  1. Fix 'map' object is not subscriptable

    @rernst
    rernst committed Feb 29, 2024
    Configuration menu
    Copy the full SHA
    9be5ff2 View commit details
    Browse the repository at this point in the history

  2. Add default setting for TrimUMI

    @rernst
    rernst committed Feb 29, 2024
    Configuration menu
    Copy the full SHA
    b45a587 View commit details
    Browse the repository at this point in the history

  3. Change or to and

    @rernst
    rernst committed Feb 29, 2024
    Configuration menu
    Copy the full SHA
    2e6bcec View commit details
    Browse the repository at this point in the history

Commits on Mar 1, 2024

  1. Fix lane, merge, ped exports

    @rernst
    rernst committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    b6a9dbd View commit details
    Browse the repository at this point in the history

  2. Sort by lane

    @rernst
    rernst committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    a2ceef6 View commit details
    Browse the repository at this point in the history

Commits on Mar 4, 2024

  1. Add duplicate code todo

    @rernst
    rernst committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    af57ce0 View commit details
    Browse the repository at this point in the history

Commits on Mar 5, 2024

  1. Fix file encoding

    @rernst
    rernst committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    4eca979 View commit details
    Browse the repository at this point in the history

Commits on Mar 8, 2024

  1. Fix for NovaSeqXPlus workflow configuration

    @rernst
    rernst committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    d1969ac View commit details
    Browse the repository at this point in the history

  2. Add Dx NovaSeqXPlus Run v1.0

    @rernst
    rernst committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    36ed301 View commit details
    Browse the repository at this point in the history

  3. Remove debug comment

    @rernst
    rernst committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    f345fc9 View commit details
    Browse the repository at this point in the history