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46 Open 49 Closed
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Issues list

There is no longer a need to manually set the scale factor in Juicebox
#94 opened Aug 26, 2024 by zengxiaofei
1
YAHS merges two chromosomes in alternate haplotype
#88 opened Jun 4, 2024 by MboiTui
7
Scaffolding by yahs introduces 200 bp gaps in the assembly
#87 opened Apr 23, 2024 by janina-rinke
3
Juicer files only allow manual curation of first scaffold in JBAT
#86 opened Apr 16, 2024 by Rhia15
2
Unexpected Zero Reads Pairs and Output Size with yahs and Juicer Preprocessing Pipeline
#85 opened Apr 16, 2024 by Hanjiangna
4
The question about regenerating a HiC contact map for the final assembly
#84 opened Mar 8, 2024 by qdu-beep
YAHS output is identical to the input assembly
#82 opened Feb 12, 2024 by sarjopp
3
juicer_tools pre runs for days then encounters java.lang.NullPointerException
#81 opened Jan 17, 2024 by ethan-baldwin
14
Round of yahs
#80 opened Jan 17, 2024 by DiegoSafian
1
generate hic contact map based on purged genome?
#79 opened Jan 15, 2024 by SmnYanGe
3
hic interactions statistics
#78 opened Dec 15, 2023 by AlcaArctica
3
error occurred after setting the "yahs -l" parameter
#77 opened Nov 29, 2023 by xychen233
1
two short(1000bp) contigs are generated by YaHS
#76 opened Nov 27, 2023 by spoonbender76
1
chromosome number more tnan my species
#75 opened Nov 8, 2023 by mengzhiyue-comeon
2
stack smashing detected
#73 opened Oct 26, 2023 by amvarani
1
No inter links from bed file?
#72 opened Sep 26, 2023 by sanalbert
11
Difference between v1.2 and v1.2a.1?
#71 opened Sep 15, 2023 by xiekunwhy
10
After manual correction of juicebox convert agp to fasta
#70 opened Sep 7, 2023 by ABDULLAHGUJJAR
1
How to display all hic signals
#68 opened Aug 18, 2023 by monian1113
1
Segmentation fault (core dumped)
#67 opened Aug 10, 2023 by wzy01-jpg
1
No reads in Hi-C contact matrices.
#66 opened Aug 5, 2023 by karthickbrlab
10
Looking for suggesion on rerunning Yahs multiple rounds
#65 opened Aug 5, 2023 by sadikmz
Why is the proportion of sequences anchored to chromosomes low?
#64 opened Jul 17, 2023 by XXH123a
Breaking contigs to scaffold ?
#63 opened Jun 30, 2023 by OririPla
Empty alignments_sorted.txt
#62 opened Jun 8, 2023 by spaddys
9
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