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19 Open 4 Closed
19 Open 4 Closed
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Issues list

inception_cov instead of covariance in PLNnetwork_param?
#33 opened Nov 14, 2024 by rwelling520
2
Hooke cannot be installed on Windows
#32 opened Jul 16, 2024 by kvlajic
Can't navigate Github pages documentation when window is too small
#31 opened May 7, 2024 by rfriedman22
write a combine_ccs function
#28 opened Feb 2, 2024 by maddyduran
@maddyduran
automatically keep certain covariates in making the pseudobulked cds
#26 opened Jan 18, 2024 by maddyduran
1
distinguish between loss of abundance + not detectable abundance
#25 opened Jan 18, 2024 by maddyduran
boolean columns in colData(cds) get lost in colData(ccs)
#20 opened Nov 1, 2023 by maddyduran
Lowly abundant cell types have highest delta abundance
#17 opened Feb 10, 2023 by crostomily
To make: perturbation by perturbation scatterplot function
#16 opened Feb 9, 2023 by maddyduran
if a cell type completely disappears in a perturbation, hooke misses it/calls the cell type 'no change' in abundance
#15 opened Jan 11, 2023 by eliza-barkan
plot_contrast fails if no edges in graph
#13 opened Nov 1, 2022 by maddyduran
investigate whitelist
#11 opened Oct 26, 2022 by maddyduran
warning for predicting timepoints outside interval
#9 opened Oct 17, 2022 by maddyduran
option to specify method for computing vhat
#8 opened Oct 4, 2022 by maddyduran
make plot_path be able to plot a contracted state graph
#5 opened Jul 8, 2022 by maddyduran
check how dplyr handles purrr::possibly returning a NULL
#4 opened Jul 7, 2022 by maddyduran
cell_group must match the paga graph resolution
#3 opened Jul 7, 2022 by maddyduran
cell count sets can be very large
#2 opened Dec 9, 2021 by maddyduran
estimate_abundances() should fill in missing variables with default values enhancement New feature or request
#1 opened Nov 24, 2021 by ctrapnell
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