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Fix repeat annotation error with trios #600

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Fix repeat annotation error with trios #600

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fellen31
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@fellen31 fellen31 commented Mar 5, 2025 •
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Closes #562 by updating stranger to 0.9.4, pipeline should again work okay with trios.

Edit: works okay with full-sized NIST trio.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@fellen31 fellen31 closed this Mar 10, 2025
@fellen31 fellen31 mentioned this pull request Mar 10, 2025
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Successfully merging this pull request may close these issues.

Stranger not working for certain variants with multiple individuals per family
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