v14.0.0

What's Changed

• Sort gene annotations by contig and start coordinate in genome_features() by @sanjaynagi in #649
• Add sample_query_options to more functions by @leehart in #645
• Remove transient warning during pytests by @jonbrenas in #650
• Colors in GWSS plots by @jonbrenas in #591
• Gene CNV optimisation by @alimanfoo in #655
• Sort discovered_releases numerically by @leehart in #666
• Better error message for gene_cnv_frequencies() by @jonbrenas in #668
• Add taxa and areas params to plot_frequencies_time_series() by @leehart in #657

Full Changelog: v13.5.0...v14.0.0

v13.5.0

What's Changed

• Add support for dynamic neighbour-joining by @alimanfoo in #647
• Plot H12 GWSS traces for multiple cohorts together in a single figure by @jonbrenas in #595

Full Changelog: v13.4.0...v13.5.0

v13.4.0

What's Changed

• Replace np.in1d with np.isin in g123.py by @leehart in #637
• Add cross_metadata to sample metadata section of Ag3 docs by @leehart in #638
• Add Ag inversion karyotyping support by @sanjaynagi in #608
• Add sample location scatter maps by @leehart in #639
• Use optional env var for show_progress in Ag3, Af1 by @leehart in #640
• Improve neighbour-joining tree performance by @alimanfoo in #641
• Small simplification to progress monitoring within plot_njt by @alimanfoo in #643

Full Changelog: v13.3.0...v13.4.0

v13.3.0

What's Changed

• Raise error if colab VM not in US by @alimanfoo in #632
• Avoid random error when performing tests by @jonbrenas in #634
• Add toolbar_options to grumbling gridplots by @leehart in #633
• Add sample_query_options by @leehart in #628

Full Changelog: v13.2.1...v13.3.0

v13.2.1

What's Changed

• Further work on scalability for large biallelic genotype data computations by @alimanfoo in #626

Full Changelog: v13.2.0...v13.2.1

v13.2.0

What's Changed

• Handle chunks parameter given as a size in memory; improve default chunks by @alimanfoo in #622
• Random error when performing tests by @jonbrenas in #619
• Fix center and zoom map parameters to allow int or float values by @leehart in #625
• Set auto_pan False for marker popup in plot_frequencies_map_markers() by @leehart in #624
• Improve performance when accessing biallelic SNP calls by @alimanfoo in #623

Full Changelog: v13.1.0...v13.2.0

v13.1.0

What's Changed

• Add parameters to the Anopheles pca function to allow better handling of outliers by @alimanfoo in #616
• Support fractions for max_missing_an and min_minor_ac parameters when accessing biallelic SNPs by @alimanfoo in #617

Full Changelog: v13.0.4...v13.1.0

v13.0.4

What's Changed

• Update switcher.json by @leehart in #602
• Pass through chunks when computing biallelic SNP calls by @alimanfoo in #613
• Handle dask distributed progress by @alimanfoo in #614
• More options for automatic sizing of chunks by @alimanfoo in #615
• Fix typos in docs by @leehart in #610

Full Changelog: v13.0.3...v13.0.4

v13.0.3

What's Changed

• Upgrade scikit-allel minimum version 1.3.13 to resolve issues with running large PCAs on a distributed cluster by @alimanfoo in #605

Full Changelog: v13.0.2...v13.0.3

v13.0.2

What's Changed

• Upgrade scikit-allel to resolve issues running large PCAs on a distributed cluster by @alimanfoo in #603

Full Changelog: v13.0.1...v13.0.2