v7.15.0

What's Changed

• Update switcher.json by @leehart in #447
• Add pairwise fst functions by @KellyLBennett in #419
• Improve performance of haplotype clustering by @alimanfoo in #450

Full Changelog: v7.14.1...v7.15.0

v7.14.1

What's Changed

• Update switcher.json by @leehart in #439
• Review API docs & refactor gene CNV frequencies functions by @alimanfoo in #444
• Remove Stamen basemaps by @leehart in #445

Full Changelog: v7.14.0...v7.14.1

v7.14.0

What's Changed

• Update Af1 cohort refs in notebooks, tests by @leehart in #426
• Add API docs by @leehart in #423
• Pin cohorts_analysis in tests, notebooks by @leehart in #428
• Update README.md re tagged docs by @leehart in #429
• Add test for sample sets with no phasing data by @ahernank in #433
• Add study_id & study_url to general metadata by @ahernank in #430
• Fix test for sample sets with no phasing data by @ahernank in #434
• Delete init character on bash examples - README.md by @ahernank in #431

Full Changelog: v7.13.0...v7.14.0

v7.13.0

What's Changed

• Add tools to bokeh plots by @harbi811 in #416
• Refactor CNV data functions for Anopheles (inc. Af1) by @leehart in #411
• Update cohorts version & expected frq col by @ahernank in #418

New Contributors

• @harbi811 made their first contribution in #416

Full Changelog: v7.12.0...v7.13.0

v7.12.0

What's Changed

• Implement plot_samples_bar() by @alimanfoo in #413

Full Changelog: v7.11.0...v7.12.0

v7.11.0

What's Changed

• Anopheles refactor part 7 - AIM genotype data by @alimanfoo in #405
• Adding XPEHH by @jonbrenas in #394

New Contributors

• @jonbrenas made their first contribution in #394

Full Changelog: v7.10.0...v7.11.0

v7.10.0

What's Changed

• Use webgl for bokeh genome plots by @alimanfoo in #406
• Relax ipyleaflet pinning by @alimanfoo in #408

Full Changelog: v7.9.0...v7.10.0

v7.9.0

What's Changed

• Anopheles refactor part 6 - haplotype data by @alimanfoo in #401
• Fix for API breakage in numpydoc_decorator by @alimanfoo in #403

Full Changelog: v7.8.0...v7.9.0

v7.8.0

What's Changed

• Add Python 3.11 support by @alimanfoo in #397
• Work around slow pomegranate install by @alimanfoo in #398
• Refactor Anopheles tests on genome sequence, genome features and sample metadata by @alimanfoo in #399
• Upgrade bokeh to 3.1 by @alimanfoo in #400

Full Changelog: v7.7.0...v7.8.0

v7.7.0

Please note that this release includes stricter type checking of parameters passed into functions in the public API. If you experience TypeError exceptions and are unclear about the cause, please go ahead and raise an issue.

What's Changed

• Anopheles refactor part 5 - AnophelesSnpData by @alimanfoo in #393

Full Changelog: v7.6.0...v7.7.0