v7.0.0
Highlights
- Adds H1X statistics for detecting shared selective sweeps, via
Ag3.h1x_gwss()
andAg3.plot_h1x_gwss()
functions. - Adds
Ag3.plot_haplotype_clustering()
to visualise hierarchical clustering of haplotypes from a given genome region. - Adds
Ag3.plot_haplotype_network()
to visualise a median-joining network of haplotypes from a given genome region. - Adds the
Pv4
andPf7
classes for accessing data in the Plasmodium releases. - Add
Pv4.sample_metadata()
andPf7.sample_metadata()
functions for accessing metadata. - Add
Pv4.variant_calls()
andPf7.variant_calls()
functions for accessing variant calls. - Add
Pv4.genome_features()
andPf7.genome_features()
functions for accessing the genome feature annotations. - Add
Pv4.genome_sequence()
andPf7.genome_sequence()
functions for accessing the reference genome sequence.
What's Changed
- Implement H1X statistic for detecting shared selective sweeps by @alimanfoo in #283
- Implement interactive haplotype cluster plot by @sanjaynagi in #285
- Haplotype median-joining networks implementation by @alimanfoo in #287
- Af1.0 by @leehart in #289
- v7.0.0 release prep by @leehart in #292
New Contributors
- @sanjaynagi made their first contribution in #285
Full Changelog: v6.1.1...v7.0.0