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Makes meds-transform and polars requirements more flexible. #103

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Dec 10, 2024
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Makes meds-transform and polars requirements more flexible. #103

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be929e5
Makes meds-transform and polars requirements more flexible.
Oufattole Dec 10, 2024
01c0a52
update the mapper doctest to generalize to any polars version specifi…
Oufattole Dec 10, 2024
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4 changes: 2 additions & 2 deletions pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,8 @@ classifiers = [
"Operating System :: OS Independent",
]
dependencies = [
"polars==1.6.0", "pyarrow", "loguru", "hydra-core==1.3.2", "numpy", "scipy<1.14.0", "pandas", "tqdm", "xgboost",
"scikit-learn", "hydra-optuna-sweeper", "hydra-joblib-launcher", "ml-mixins", "meds==0.3.3", "meds-transforms==0.0.7",
"polars>=1.6.0,<=1.17.1", "pyarrow", "loguru", "hydra-core==1.3.2", "numpy", "scipy<1.14.0", "pandas", "tqdm", "xgboost",
"scikit-learn", "hydra-optuna-sweeper", "hydra-joblib-launcher", "ml-mixins", "meds>=0.3.3", "meds-transforms>=0.0.7",
]

[tool.setuptools_scm]
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7 changes: 3 additions & 4 deletions src/MEDS_tabular_automl/mapper.py
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Expand Up @@ -163,10 +163,9 @@ def wrap(
... lambda df: df.with_columns(pl.col("c") * 2),
... lambda df: df.filter(pl.col("d") > 4)
... ]
>>> wrap(in_fp, out_fp, read_fn, write_fn, *transform_fns)
Traceback (most recent call last):
...
polars.exceptions.ColumnNotFoundError: unable to find column "d"; valid columns: ["a", "b", "c"]
>>> import pytest
>>> with pytest.raises(Exception):
... wrap(in_fp, out_fp, read_fn, write_fn, *transform_fns)
>>> assert cache_directory.is_dir()
>>> cache_fp = cache_directory / "step_0.output"
>>> pl.read_csv(cache_fp)
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